Fig. 3
Differentially expressed (DE) transcripts (padj < 0.05) upon NL1-I and BCMV-S2 treatments. The transcripts were called as significant using adjusted p values less than 0.05 with false discovery rate (FDR) and log2 fold values more than 1 or less than −1. The extent and distribution of transcript expression differences were visualized using volcano plots for (a) NL1-I treatment, (b) BCMV-S2 treatments. The x-axis represent –log10 of adjusted p-values (FDR; [43], and y-axis represent log2 fold change values between control and treatment comparison. The numbers of significant DE genes were shown using bar plot (c), where orange color represent significantly downregulated genes and blue color represent significantly upregulated genes upon different virus treatments