Table 1 Read statistics for healthy and BCMV inoculated treatments at 4 and 8 days after infection

Total Number of Reads

100384228

85580983

95822434

100826142

101771895

97866045

Average Number of Reads

33461409

28526994

31940811

33608714

33923965

32622015

Cleaned Reads

33424094

28496111

31900317

33566283

33881828

32580889

Mapped

32016716 (95.8 %)

27359710 (96.0 %)

30558211 (95.8 %)

32359045 (96.4 %)

31295370 (92.4 %)

28489996 (87.4 %)

Unique Alignment

28953972 (86.6 %)

25106389 (88.1 %)

27610543 (86.5 %)

29033850 (86.5 %)

28563040 (84.3 %)

25955587 (80.0 %)

Multiple Alignment

3062744 (9.6 %)

2253321 (8.2 %)

2947668 (9.6 %)

3325195 (10.3 %)

2732330 (8.7 %)

2534409 (8.9 %)

Reads Unmapped

1407378 (4.2 %)

1136400 (4.0 %)

1342105 (4.2 %)

1207238 (3.6 %)

2586458 (7.6 %)

4090893 (12.5 %)

Intragenic Mapping

29974232 (93.6 %)

25976900 (94.9 %)

28844743 (94.4 %)

31105962 (96.1 %)

29702292 (94.9 %)

26984179 (94.7 %)

Exon Mapping

28665015 (89.5 %)

24837853 (90.7 %)

27654993 (90.5 %)

29549785 (91.3 %)

28357718 (90.6 %)

25632321 (90.0 %)

Intron Mapping

1309218 (4.1 %)

1139048 (4.2 %)

1189751 (3.9 %)

1556179 (4.8 %)

1344572 (4.3 %)

1351857 (4.7 %)

Intergenic Mapping

2019225 (6.3 %)

1369481 (5.0 %)

1692646 (5.5 %)

1244967 (3.8 %)

1582672 (5.0 %)

1496416 (5.2 %)

Genes Detected

21377

21179

21365

21432

21667

21400