| |
Day4 Healthy
|
Day4 NL1-I
|
Day4 BCMV-S2
|
Day8 Healthy
|
Day8 NL1-I
|
Day8 BCMV-S2
|
|---|
|
Total Number of Reads
|
100384228
|
85580983
|
95822434
|
100826142
|
101771895
|
97866045
|
|
Average Number of Reads
|
33461409
|
28526994
|
31940811
|
33608714
|
33923965
|
32622015
|
|
Cleaned Reads
|
33424094
|
28496111
|
31900317
|
33566283
|
33881828
|
32580889
|
|
Mapped
|
32016716 (95.8 %)
|
27359710 (96.0 %)
|
30558211 (95.8 %)
|
32359045 (96.4 %)
|
31295370 (92.4 %)
|
28489996 (87.4 %)
|
|
Unique Alignment
|
28953972 (86.6 %)
|
25106389 (88.1 %)
|
27610543 (86.5 %)
|
29033850 (86.5 %)
|
28563040 (84.3 %)
|
25955587 (80.0 %)
|
|
Multiple Alignment
|
3062744 (9.6 %)
|
2253321 (8.2 %)
|
2947668 (9.6 %)
|
3325195 (10.3 %)
|
2732330 (8.7 %)
|
2534409 (8.9 %)
|
|
Reads Unmapped
|
1407378 (4.2 %)
|
1136400 (4.0 %)
|
1342105 (4.2 %)
|
1207238 (3.6 %)
|
2586458 (7.6 %)
|
4090893 (12.5 %)
|
|
Intragenic Mapping
|
29974232 (93.6 %)
|
25976900 (94.9 %)
|
28844743 (94.4 %)
|
31105962 (96.1 %)
|
29702292 (94.9 %)
|
26984179 (94.7 %)
|
|
Exon Mapping
|
28665015 (89.5 %)
|
24837853 (90.7 %)
|
27654993 (90.5 %)
|
29549785 (91.3 %)
|
28357718 (90.6 %)
|
25632321 (90.0 %)
|
|
Intron Mapping
|
1309218 (4.1 %)
|
1139048 (4.2 %)
|
1189751 (3.9 %)
|
1556179 (4.8 %)
|
1344572 (4.3 %)
|
1351857 (4.7 %)
|
|
Intergenic Mapping
|
2019225 (6.3 %)
|
1369481 (5.0 %)
|
1692646 (5.5 %)
|
1244967 (3.8 %)
|
1582672 (5.0 %)
|
1496416 (5.2 %)
|
|
Genes Detected
|
21377
|
21179
|
21365
|
21432
|
21667
|
21400
|
- Total number of reads represent the total count across three biological replicates, while average number of reads represent the mean value from three biological replicates. The genes were considered as expressed with minimum three reads aligned to a gene model
