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Table 1 Read statistics for healthy and BCMV inoculated treatments at 4 and 8 days after infection

From: Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

  Day4 Healthy Day4 NL1-I Day4 BCMV-S2 Day8 Healthy Day8 NL1-I Day8 BCMV-S2
Total Number of Reads 100384228 85580983 95822434 100826142 101771895 97866045
Average Number of Reads 33461409 28526994 31940811 33608714 33923965 32622015
Cleaned Reads 33424094 28496111 31900317 33566283 33881828 32580889
Mapped 32016716 (95.8 %) 27359710 (96.0 %) 30558211 (95.8 %) 32359045 (96.4 %) 31295370 (92.4 %) 28489996 (87.4 %)
Unique Alignment 28953972 (86.6 %) 25106389 (88.1 %) 27610543 (86.5 %) 29033850 (86.5 %) 28563040 (84.3 %) 25955587 (80.0 %)
Multiple Alignment 3062744 (9.6 %) 2253321 (8.2 %) 2947668 (9.6 %) 3325195 (10.3 %) 2732330 (8.7 %) 2534409 (8.9 %)
Reads Unmapped 1407378 (4.2 %) 1136400 (4.0 %) 1342105 (4.2 %) 1207238 (3.6 %) 2586458 (7.6 %) 4090893 (12.5 %)
Intragenic Mapping 29974232 (93.6 %) 25976900 (94.9 %) 28844743 (94.4 %) 31105962 (96.1 %) 29702292 (94.9 %) 26984179 (94.7 %)
Exon Mapping 28665015 (89.5 %) 24837853 (90.7 %) 27654993 (90.5 %) 29549785 (91.3 %) 28357718 (90.6 %) 25632321 (90.0 %)
Intron Mapping 1309218 (4.1 %) 1139048 (4.2 %) 1189751 (3.9 %) 1556179 (4.8 %) 1344572 (4.3 %) 1351857 (4.7 %)
Intergenic Mapping 2019225 (6.3 %) 1369481 (5.0 %) 1692646 (5.5 %) 1244967 (3.8 %) 1582672 (5.0 %) 1496416 (5.2 %)
Genes Detected 21377 21179 21365 21432 21667 21400
  1. Total number of reads represent the total count across three biological replicates, while average number of reads represent the mean value from three biological replicates. The genes were considered as expressed with minimum three reads aligned to a gene model