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Table 2 List of top 30 upregulated genes (p < 0.05) on NL1-I and BCMV-S2 virus treatments, respectively

From: Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

NL1-I Log2 fold change Annotation BCMV-S2 Log2 fold change Annotation
Phvul.001G042200 6.27 WRKY DNA -binding domain Phvul.001G040600 3.97 Protein kinase domain
Phvul.001G043000 5.93 Leucine rich repeat N-terminal domain Phvul.001G042100 4.27 WRKY DNA -binding domain
Phvul.001G070000 5.97 Protein tyrosine kinase Phvul.001G042200 4.34 WRKY DNA -binding domain
Phvul.001G128500 6.82 Glycosyl hydrolases family 17 Phvul.001G043000 4.04 Leucine rich repeat N-terminal domain
Phvul.002G083900 6.70 CALCIUM-BINDING EF HAND FAMILY PROTEIN Phvul.001G128500 4.50 Glycosyl hydrolases family 17
Phvul.002G180800a 6.47 Calcium-binding EF-hand family (0.003) Phvul.001G192000 3.64 No apical meristem (NAM) protein
Phvul.002G180900 a 6.85 Calcium-binding EF-hand family (0.002) Phvul.002G075200 3.62 GLUCOSYL/GLUCURONOSYL TRANSFERASES
Phvul.002G189900 6.02 VQ motif Phvul.002G083900 3.96 CALCIUM-BINDING EF HAND FAMILY PROTEIN
Phvul.002G204500 6.08 Glucose-6-phosphate/phosphate membrane antiporter Phvul.002G180900 a 3.76 Calcium-binding EF-hand family (0.07)
Phvul.002G209400 6.07 Pathogenesis-related protein Bet v I family Phvul.002G204500 3.79 Glucose-6-phosphate/phosphate membrane antiporter
Phvul.003G022400 6.25 COPPER TRANSPORT PROTEIN ATOX1-RELATED Phvul.002G209400 4.18 response to biotic stimulus Pathogenesis-related protein Bet v I family
Phvul.003G164600 5.91 Peroxidase activity, response to oxidative stress Phvul.003G098500 3.69 Protein of unknown function (DUF679)
Phvul.003G247500 6.17 LEUCINE-RICH REPEAT-CONTAINING PROTEIN Phvul.003G164600 5.57 Peroxidase activity, response to oxidative stress
Phvul.003G292900 5.98 PLAC8 family Phvul.004G101500 3.65 Hydrolase activity, hydrolyzing O-glycosyl compounds
Phvul.004G155400 6.52 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE Phvul.004G142700 3.95 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE
Phvul.005G026700 6.59 NA Phvul.004G155400 3.92 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE
Phvul.005G054100 6.11 Glutathione S-transferase Phvul.005G026600a 4.17 Plant protein 1589 of unknown function (0.03)
Phvul.005G054200 6.59 Glutathione S-transferase Phvul.005G026700 5.42 NA
Phvul.005G171900 6.41 WD domain, G-beta repeat Phvul.005G038300 4.17 NA
Phvul.006G129500 6.24 Peroxidase activity, response to oxidative stress Phvul.005G133400 4.03 CARBONIC ANHYDRASE (CARBONATE DEHYDRATASE)
Phvul.006G172000 6.39 NA Phvul.005G164500 3.74 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE
Phvul.006G196900 8.27 Pathogenesis-related protein Phvul.005G171900 3.69 WD domain, G-beta repeat
Phvul.006G197200 8.05 Pathogenesis-related protein Phvul.006G038100 3.62 NA
Phvul.007G040900 5.99 Peptidase Phvul.006G129500 4.46 Peroxidase activity, response to oxidative stress
Phvul.008G011500 7.15 Oxidation-reduction process, C1-like domain Phvul.006G130000 5.72 Peroxidase activity, response to oxidative stress
Phvul.008G044400 5.90 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE Phvul.006G196900 4.61 Pathogenesis-related protein
Phvul.008G080000 5.88 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE Phvul.006G197200 5.80 Pathogenesis-related protein
Phvul.008G088700 6.90 Tubby C 2 Phvul.007G050500 4.17 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE
Phvul.008G109600 7.31 LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE Phvul.007G211600 4.52 NA
Phvul.008G139900 6.90 NA Phvul.008G088400 3.88 Tubby C 2
  1. The bold gene names are common between the two treatments. Gene annotations were retrieved for common bean genome in Phytozome. The unannotated genes were functionally classified using TAIR (indicated by a, the e-value of TAIR match is indicated in the brackets). "NA" represents no functional characterization of gene is available
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BMC Genomics

ISSN: 1471-2164

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