Table 3 List of top 30 downregulated genes (p < 0.05) on NL1-I and BCMV-S2 virus treatments, respectively
NL1-I | Log2 fold change | Annotation | BCMV-S2 | Log2 fold change | Annotation |
|---|---|---|---|---|---|
Phvul.001G050500 | −2.68 | Adenine Phosphoribosyltransferase | Phvul.001G021700a | −2.38 | Protein kinase superfamily (0.010) |
Phvul.001G091600 | −3.65 | Homocitrate synthase-related | Phvul.001G091600 | −4.08 | HOMOCITRATE SYNTHASE-RELATED |
Phvul.001G138800 a | −3.31 | dsRNA-binding protein 3 (DRB3) (0.007) | Phvul.001G091700a | −3.24 | ARABIDOPSIS HEAVY METAL ATPASE 8 (0.029) |
Phvul.001G165900 | −2.75 | ABC-2 type transporter | Phvul.001G138800 a | −2.68 | dsRNA-binding protein 3 (DRB3) (0.007) |
Phvul.001G206500a | −2.79 | Hexokinase 3 (0.006) | Phvul.001G151900 | −2.87 | Terpene synthase family, metal binding domain |
Phvul.001G239100a | −3.00 | Encodes a microRNA that targets several TIR1/AFB family members (0.003) | Phvul.001G165800 | −3.38 | ABC transporter |
Phvul.002G153600 | −2.80 | Hydroxymethylglutaryl-CoA synthase | Phvul.001G165900 | −3.05 | ABC-2 type transporter |
Phvul.002G193300 | −3.00 | Oxidoreductase, 20G-Fe(II) oxygenase family protein | Phvul.001G166200 | −2.42 | ABC-2 type transporter |
Phvul.002G216900 | −3.24 | Squalene Monooxygenase | Phvul.001G206700 | −2.53 | ABC transporter |
Phvul.002G259700 a | −3.15 | Transposable element gene (0.092) | Phvul.001G251300 | −2.34 | TREHALOSE-6-PHOSPHATE SYNTHASE |
Phvul.002G268800 | −3.79 | EamA-like transporter family | Phvul.001G263900 | −2.36 | Protein of unknown function (DUF1264) |
Phvul.002G297200 a | −3.35 | RING/U-box superfamily protein (0.055) | Phvul.002G059500 | −2.33 | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE |
Phvul.002G297300 a | −3.53 | Mediator complex subunit Med23 (0.075) | Phvul.002G150200 | −2.74 | Drug transmembrane transporter activity |
Phvul.003G159200 | −2.91 | Plasma membrane H + −transporting ATPase | Phvul.002G216900 | −2.48 | SQUALENE MONOOXYGENASE |
Phvul.003G192800 | −2.81 | H+/oligopeptide symporter | Phvul.002G227500a | −2.69 | Encodessl dehydroquinate-shikimate dehydrogenase enzyme (2e-08) |
Phvul.003G218900 | −3.27 | Protease inhibitor/seed storage/LTP family | Phvul.002G259700 a | −2.32 | Transposable element gene (0.092) |
Phvul.003G248200 | −2.98 | Alpha/Beta Hydrolase Fold-Containing Protein | Phvul.002G294200 | −2.80 | AAA-FAMILY ATPASE |
Phvul.003G278200 | −3.03 | Glucose dehydrogenase/choline dehydrogenase/mandelonitrile Lyase | Phvul.002G297200 a | −2.55 | RING/U-box superfamily protein (0.055) |
Phvul.004G142000 | −3.17 | Synaptic vesicle and related transporters | Phvul.002G297300 a | −3.13 | Mediator complex subunit Med23 (0.075) |
Phvul.005G001000 | −3.24 | Cellulose synthase | Phvul.003G060100 | −2.92 | Dehydrogenases with different specificities |
Phvul.005G005000 | −2.83 | ATP binding | Phvul.003G082300 | −2.36 | OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN |
Phvul.005G005400 | −2.69 | UDP-glucoronosyl and UDP-glucosyl transferase | Phvul.003G278200 | −2.59 | Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase |
Phvul.005G032500 | −3.68 | Dirigent-like protein | Phvul.005G001000 | −2.49 | Cellulose synthase |
Phvul.005G032600 | −3.28 | Dirigent-like protein | Phvul.005G005400 | −2.47 | UDP-glucoronosyl and UDP-glucosyl transferase |
Phvul.005G069400 | −3.09 | NA | Phvul.005G032500 | −3.09 | Dirigent-like protein |
Phvul.005G145700 | −2.72 | DVL family | Phvul.005G032600 | −2.73 | Dirigent-like protein |
Phvul.005G159600 | −3.25 | GTP-binding protein | Phvul.005G159600 | −2.94 | GTP-binding protein |
Phvul.005G166200 | −4.20 | Phosphorelay signal transduction system | Phvul.006G195500 | −2.54 | Helix-loop-helix DNA-binding domain, transcription regulator activity |
Phvul.005G170300 | −3.09 | Aquaporin (major intrinsic protein family) | Phvul.007G209700 | −3.09 | ABC transporter |
Phvul.006G034000 | −2.71 | NAD dependent epimerase/dehydratase family | Phvul.007G275800 | −2.38 | Hemopexin |