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Table 4 KEGG pathway analysis using DE genes on NL1-I and BCMV-S2 virus treatments

From: Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

Treatment Dataset Pathway DE Genes P-Value
NL1-I Unique Plant-pathogen interaction 20 0.049
   Photosynthesis - antenna proteins 12 0.001
   Pentose phosphate pathway 16 0.006
   Protein processing in endoplasmic reticulum 39 0.014
   N-Glycan biosynthesis 12 0.020
   Protein export 12 0.028
   Biosynthesis of secondary metabolites 149 0.040
BCMV-S2 Unique Nitrogen metabolism 9 0.049
   Ribosome 23 0.000
   Ribosome biogenesis in eukaryotes 7 0.001
   Diterpenoid biosynthesis 3 0.007
NL1-I, BCMV-S2 Common Ribosome 79 0.000
   Ribosome biogenesis in eukaryotes 22 0.000
   Plant-pathogen interaction 20 0.006
NL1-I Downregulated Photosynthesis - antenna proteins 14 0.000
   Sesquiterpenoid and triterpenoid biosynthesis 9 0.001
   Biosynthesis of secondary metabolites 119 0.001
   Starch and sucrose metabolism 36 0.002
   Metabolic pathways 207 0.003
   Carbon fixation in photosynthetic organisms 15 0.003
   Glyoxylate and dicarboxylate metabolism 13 0.006
   Pentose phosphate pathway 12 0.008
BCMV-S2 Downregulated Photosynthesis - antenna proteins 4 0.011
   Starch and sucrose metabolism 14 0.014
   Linoleic acid metabolism 4 0.019
   Valine, leucine and isoleucine biosynthesis 3 0.035
   Valine, leucine and isoleucine degradation 4 0.050
   Sesquiterpenoid and triterpenoid biosynthesis 3 0.050
NL1-I Upregulated Ribosome 111 0.000
   Protein processing in endoplasmic reticulum 46 0.000
   Plant-pathogen interaction 41 0.000
   Glutathione metabolism 22 0.000
   Ribosome biogenesis in eukaryotes 22 0.000
   Phenylalanine metabolism 25 0.002
   N-Glycan biosynthesis 12 0.003
   Phenylpropanoid biosynthesis 33 0.004
   Protein export 12 0.005
BCMV-S2 Upregulated Ribosome 102 0.000
   Ribosome biogenesis in eukaryotes 28 0.000
   Plant-pathogen interaction 17 0.004
   Glutathione metabolism 11 0.004
  1. The analysis was performed using KOBAS v2.0 [42] by splitting the DE genes dataset into unique, shared, upregulated and downregulated genes for studied virus treatments. The pathways in bold letters are significant at adjusted p-value < 0.05