Table 4 KEGG pathway analysis using DE genes on NL1-I and BCMV-S2 virus treatments
Treatment | Dataset | Pathway | DE Genes | P-Value |
|---|---|---|---|---|
NL1-I | Unique | Plant-pathogen interaction | 20 | 0.049 |
| Â | Â | Photosynthesis - antenna proteins | 12 | 0.001 |
| Â | Â | Pentose phosphate pathway | 16 | 0.006 |
| Â | Â | Protein processing in endoplasmic reticulum | 39 | 0.014 |
| Â | Â | N-Glycan biosynthesis | 12 | 0.020 |
| Â | Â | Protein export | 12 | 0.028 |
| Â | Â | Biosynthesis of secondary metabolites | 149 | 0.040 |
BCMV-S2 | Unique | Nitrogen metabolism | 9 | 0.049 |
| Â | Â | Ribosome | 23 | 0.000 |
| Â | Â | Ribosome biogenesis in eukaryotes | 7 | 0.001 |
| Â | Â | Diterpenoid biosynthesis | 3 | 0.007 |
NL1-I, BCMV-S2 | Common | Ribosome | 79 | 0.000 |
| Â | Â | Ribosome biogenesis in eukaryotes | 22 | 0.000 |
| Â | Â | Plant-pathogen interaction | 20 | 0.006 |
NL1-I | Downregulated | Photosynthesis - antenna proteins | 14 | 0.000 |
| Â | Â | Sesquiterpenoid and triterpenoid biosynthesis | 9 | 0.001 |
| Â | Â | Biosynthesis of secondary metabolites | 119 | 0.001 |
| Â | Â | Starch and sucrose metabolism | 36 | 0.002 |
| Â | Â | Metabolic pathways | 207 | 0.003 |
| Â | Â | Carbon fixation in photosynthetic organisms | 15 | 0.003 |
| Â | Â | Glyoxylate and dicarboxylate metabolism | 13 | 0.006 |
| Â | Â | Pentose phosphate pathway | 12 | 0.008 |
BCMV-S2 | Downregulated | Photosynthesis - antenna proteins | 4 | 0.011 |
| Â | Â | Starch and sucrose metabolism | 14 | 0.014 |
| Â | Â | Linoleic acid metabolism | 4 | 0.019 |
| Â | Â | Valine, leucine and isoleucine biosynthesis | 3 | 0.035 |
| Â | Â | Valine, leucine and isoleucine degradation | 4 | 0.050 |
| Â | Â | Sesquiterpenoid and triterpenoid biosynthesis | 3 | 0.050 |
NL1-I | Upregulated | Ribosome | 111 | 0.000 |
| Â | Â | Protein processing in endoplasmic reticulum | 46 | 0.000 |
| Â | Â | Plant-pathogen interaction | 41 | 0.000 |
| Â | Â | Glutathione metabolism | 22 | 0.000 |
| Â | Â | Ribosome biogenesis in eukaryotes | 22 | 0.000 |
| Â | Â | Phenylalanine metabolism | 25 | 0.002 |
| Â | Â | N-Glycan biosynthesis | 12 | 0.003 |
| Â | Â | Phenylpropanoid biosynthesis | 33 | 0.004 |
| Â | Â | Protein export | 12 | 0.005 |
BCMV-S2 | Upregulated | Ribosome | 102 | 0.000 |
| Â | Â | Ribosome biogenesis in eukaryotes | 28 | 0.000 |
| Â | Â | Plant-pathogen interaction | 17 | 0.004 |
| Â | Â | Glutathione metabolism | 11 | 0.004 |