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Table 1 The summaries of orthologous and motif prediction on E. coli K12 by MP3

From: An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes

Statistics on orthologous and prediction
 Genes 4,146
 Genes with known regulatory activities 1,546
 Average number of orthologous genes 60.49
 Operons 2,379
 Operons with more than 2 orthologous operons 2,252 (90.5 %)
 Average number of orthologous operons 81.1
 Promoter sequences 2,252
 Operons with known TFBSs 583
 CBRs by MP3 12,820
 Motif profiles by MP3 (Alternatives) 12,820 (76,732)
Data in evaluation
 Promoter sequences with known TFBSs 563
 The known TFBSs 2,048
Evaluation results on 563 promoters
 CBRs by MP3 3,205
 Motif profiles by MP3 (Alternatives) 3,205 (22,388)
Top CBRs 1 2 3 4 5
 CBR coverage 455 (22 %) 710 (35 %) 925 (45 %) 1,080 (53 %) 1,206 (59 %)
 Motif Profiles coverage 425 (21 %) 675 (33 %) 878 (43 %) 1,022 (50 %) 1,133 (55 %)