Table 2 Substitution of O. rufipogon segments in CSSLs and cumulative proportion of donor genome represented by homozygous and heterozygous segments
Chromosome | Homozygous segments | Heterozygous segments | Total segment Length (cM) | Effective coverage length (cM) | Genome coverage (%) (Het + Homo) | ||
|---|---|---|---|---|---|---|---|
Number of segments | Average length (cM) | Number of segments | Average length (cM) | ||||
1 | 38 | 6.10 | 4 | 5.90 | 255.1 | 180.0 | 89.0 |
2 | 64 | 7.55 | 13 | 5.98 | 483.4 | 201.3 | 100 |
3 | 37 | 9.10 | 4 | 8.12 | 369.4 | 221.4 | 100 |
4 | 23 | 5.20 | 4 | 3.70 | 134.4 | 108.5 | 74.9 |
5 | 46 | 7.02 | 15 | 6.90 | 406.6 | 142.0 | 100 |
6 | 31 | 3.37 | 3 | 6.86 | 125.1 | 90.5 | 62.3 |
7 | 39 | 4.77 | 7 | 4.45 | 217.5 | 69.8 | 61.6 |
8 | 38 | 5.92 | 8 | 6.57 | 277.5 | 105.8 | 82.4 |
9 | 23 | 5.27 | 6 | 6.08 | 157.9 | 86.1 | 83.1 |
10 | 32 | 9.13 | 5 | 7.32 | 328.8 | 146.6 | 100 |
11 | 19 | 4.27 | 0 | 0 | 86.8 | 82.3 | 66.2 |
12 | 22 | 4.73 | 3 | 7.3 | 126.0 | 96.8 | 89.2 |
Average | 2.16 | 6.03 | 0.38 | 5.76 | (Total) 2968.5 | (Total) 1531.1 | 84.9 |