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Table 4 QTLs for 10 agronomic traits detected in the 198 CSSLs at both sites

From: Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311

Trait QTL Marker Chromosome PVE (%) Add
Days to heading qDTH2-1 RM485 2 17.3 20.6
qDTH2-2 RM535 2 7.89 19.0
qDTH10-1 RM590 10 15.3 21.2
Seed shattering qSH2-1 RM7288 2 6.18 1.16
qSH4-1 RM349 4 8.55 1.66
qSH5-1 RM289 5 5.04 -0.76
Plant height qPH1-1 RM128 1 7.01 15.9
qPH1-2 RM473 1 9.05 25.3
qPH2-1 RM6318 2 5.20 -17.6
qPH4-1 RM280 4 8.43 34.5
Panicles per plant qPPP4-1 RM17308 4 5.66 0.89
Number of grains per panicle qGPP7-1 RM184 7 3.54 -50.2
Grain length qGL3-1 RM15382 3 15.0 -0.45
qGL10-1 RM467 10 6.07 0.11
qGL12-1 RM519 12 15.3 0.27
Grain width qGW3-2 RM514 3 11.2 -0.15
qGW8-1 RM544 8 6.08 -0.06
qGW1-1 RM128 1 11.3 -0.10
qGW3-1 RM3467 3 19.0 0.10
1000-grain weight qTGW9-1 RM105 9 8.07 -1.24
qTGW5-1 RM188 5 11.9 -1.50
Length of flag leaf qLFL4-1 RM280 4 18.6 10.6
qLFL5-1 RM17954 5 4.50 2.62
Width of flag leaf qWFL11-1 RM206 11 8.58 -0.09
qWFL1-1 RM128 1 6.48 -0.10
  1. The value of PVE (Phenotypic variation explained by the QTL) and Add (Estimated additive effect of the QTL) were from Nanjing site