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Table 2 Families of differentially expressed GH between in day 3 and 5 known to be implicated in plant cell wall (PCW) degradation and their enzymatic activities referenced in CAZy

From: CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

Family Number of DE genes Enzymatic activities referenced in CAZy
GH3 236 ß-glucosidase; xylan 1,4-ß-xylosidase; ß-glucosylceramidase; ß-N-acetylhexosaminidase; a-L-arabinofuranosidase; glucan 1,3-ß-glucosidase; glucan 1,4-ß-glucosidase; isoprimeverose-producing oligoxyloglucan hydrolase; coniferin ß-glucosidase; exo-1,3-1,4-glucanase; ß-N-acetylglucosaminide phosphorylases
GH43 98 ß-xylosidase; a-L-arabinofuranosidase; arabinanase; xylanase; galactan 1,3-ß-galactosidase; a-1,2-L-arabinofuranosidase; exo-a-1,5-L-arabinofuranosidase; [inverting] exo-a-1,5-L-arabinanase; ß-1,3-xylosidase
GH5 81 endo-ß-1,4-glucanase / cellulase; endo-ß-1,4-xylanase; ß-glucosidase; ß-mannosidase; ß-glucosylceramidase; glucan ß-1,3-glucosidase; licheninase; exo-ß-1,4-glucanase / cellodextrinase; glucan endo-1,6-ß-glucosidase; mannan endo-ß-1,4-mannosidase; cellulose ß-1,4-cellobiosidase; steryl ß-glucosidase; endoglycoceramidase; chitosanase; ß-primeverosidase; xyloglucan-specific endo-ß-1,4-glucanase; endo-ß-1,6-galactanase; hesperidin 6-O-a-L-rhamnosyl-ß-glucosidase; ß-1,3-mannanase; arabinoxylan-specific endo-ß-1,4-xylanase; mannan transglycosylase
GH1 47 ß-glucosidase; ß-galactosidase; ß-mannosidase; ß-glucuronidase; ß-xylosidase; ß-D-fucosidase; phlorizin hydrolase; exo-ß-1,4-glucanase; 6-phospho-ß-galactosidase; 6-phospho-ß-glucosidase; strictosidine ß-glucosidase; amygdalin ß-glucosidase; prunasin ß-glucosidase; vicianin hydrolase; raucaffricine ß-glucosidase; thioglucosidase; ß-primeverosidase; isoflavonoid 7-O-ß-apiosyl-ß-glucosidase; ABA-specific ß-glucosidase; DIMBOA ß-glucosidase; ß-glycosidase; hydroxyisourate hydrolase
GH10 44 endo-1,4-ß-xylanase; endo-1,3-ß-xylanase; tomatinase; xylan endotransglycosylase
GH39 34 a-L-iduronidase; ß-xylosidase
GH8 31 chitosanase; cellulase; licheninase; endo-1,4-ß-xylanase; reducing-end-xylose releasing exo-oligoxylanase
GH51 26 endoglucanase; endo-ß-1,4-xylanase; ß-xylosidase; a-L-arabinofuranosidase
GH6 22 endoglucanase; cellobiohydrolase
GH30 13 endo-ß-1,4-xylanase; ß-glucosidase; ß-glucuronidase; ß-xylosidase; ß-fucosidase; glucosylceramidase; ß-1,6-glucanase; glucuronoarabinoxylan endo-ß-1,4-xylanase; endo-ß-1,6-galactanase; [reducing end] ß-xylosidase
GH9 9 endoglucanase; endo-ß-1,3(4)-glucanase / lichenase-laminarinase; ß-glucosidase; lichenase / endo-ß-1,3-1,4-glucanase; exo-ß-1,4-glucanase / cellodextrinase; cellobiohydrolase; xyloglucan-specific endo-ß-1,4-glucanase / endo-xyloglucanase; exo-ß-glucosaminidase
GH74 8 endoglucanase; oligoxyloglucan reducing end-specific cellobiohydrolase; xyloglucanase
GH12 7 endoglucanase; xyloglucan hydrolase; ß-1,3-1,4-glucanase; xyloglucan endotransglycosylase
GH54 6 a-L-arabinofuranosidase; ß-xylosidase
GH11 5 endo-ß-1,4-xylanase; endo-ß-1,3-xylanase
GH62 5 a-L-arabinofuranosidase
GH48 4 reducing end-acting cellobiohydrolase; endo-ß-1,4-glucanase; chitinase
GH64 4 ß-1,3-glucanase
GH63 3 processing a-glucosidase; a-1,3-glucosidase; a-glucosidase; mannosylglycerate a-mannosidase / mannosylglycerate hydrolase
GH44 2 endoglucanase; xyloglucanase
GH55 2 exo-ß-1,3-glucanase; endo-ß-1,3-glucanase
GH45 1 endoglucanase
GH52 1 β-xylosidase
GH116 1 ß-glucosidase; ß-xylosidase; acid ß-glucosidase/ß-glucosylceramidase; ß-N-acetylglucosaminidase