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Table 2 Identification of viruses from raw mRNA-Seq data of pear transcriptome by BLAST search

From: Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

Name of virus

Accession no.

Size of genome

Read count

Apple stem grooving virus

NC_001749.2

6,495 bp

4274

Potato leafroll virus

NC_001747.1

5,987 bp

66

Prunus virus T isolate Aze239

NC_024686.1

6,835 bp

52

Apple green crinkle associated virus

NC_018714.1

9,266 bp

39

Apple stem pitting virus

NC_003462.2

9,332 bp

17

Apricot latent virus

NC_014821.1

9,311 bp

4

Grapevine fleck virus

NC_003347.1

7,564 bp

4

Rupestris stem pitting associated virus-1

NC_001948.1

8,744 bp

2

Apple chlorotic leaf spot virus

NC_001409.1

7,555 bp

1

Grapevine Pinot gris virus

NC_015782.1

7,275 bp

1

Zucchini yellow mosaic virus

NC_003224.1

9,591 bp

1