From: RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.)
Type and sub-group (SG)a) | Trinity transcript id | Homologous gene in Lilium | Homologous gene in Arabidopsis | Homologous gene in other species | Blastp top hit | Length | Identity | E-value | FPKM (expression) in | logFC | logCPM | FDR | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Upper tepals | Tepal bases | ||||||||||||
MYB3R type | |||||||||||||
 | c19823_g1 |  | AtMYB3R-1 |  | myb-related protein 3R-1-like isoform X2 [Phoenix dactylifera] | 242 | 74 % | 2E-115 | 4.24 | 7.13 | −0.61 | 1.90 | 1 |
 | c27498_g5 |  | AtMYB3R-3,3R-5 |  | myb-related protein 3R-1-like [Musa acuminata subsp. malaccensis] | 502 | 50 % | 7E-154 | 10.74 | 11.67 | −0.11 | 4.65 | 1 |
R2R3-MYB type | |||||||||||||
 SG 1 | c10428_g1 |  | AtMYB30,94,96 | Am306 | R2R3-MYB transcriptional factor, partial [Lilium hybrid division I] | 124 | 75 % | 2E-42 | 2.96 | 2.18 | 0.30 | −0.14 | 1 |
 SG 1 | c19652_g1 | LhMYB7 | AtMYB30,94,96 | Am306 | R2R3-MYB transcriptional factor, partial [Lilium hybrid division I] | 193 | 99 % | 2E-112 | 6.94 | 3.00 | 1.20 | 1.56 | 0.5056056 |
 SG 1 | c19652_g2 | LhMYB7 | AtMYB30,94,96 | Am306 | R2R3-MYB transcriptional factor, partial [Lilium hybrid division I] | 109 | 100 % | 1E-63 | 1.72 | 5.00 | −1.19 | 0.26 | 0.9933287 |
 SG 1 | c23337_g2 | LhMYB5 | AtMYB30,94,96 | Am306 | R2R3-MYB transcriptional factor, partial [Lilium hybrid division I] | 309 | 98 % | 6E-141 | 7.72 | 14.20 | −0.85 | 3.12 | 0.5775627 |
 SG 2 | c2281_g1 |  | AtMYB13,14,15 |  | putative MYB transcription factor [Rosa rugosa] | 89 | 83 % | 3E-48 | 10.39 | 7.12 | 0.65 | 1.35 | 1 |
 SG 2 | c8990_g1 |  | AtMYB13,14,15 |  | myb-like protein Myb15 [Citrus maxima] | 83 | 83 % | 8E-47 | 1.73 | 8.46 | −2.10 | −0.42 | 0.9933287 |
 SG 2 | c12438_g1 |  | AtMYB13,14,15 |  | myb-related protein Zm1-like [Elaeis guineensis] | 259 | 51 % | 1E-64 | 14.05 | 12.72 | 3.19 | 2.36 | 0.004292067 |
 SG 2 | c18397_g1 |  | AtMYB13,14,15 |  | Myb-related protein Zm1 [Aegilops tauschii] | 206 | 51 % | 1E-43 | 4.60 | 4.21 | 0.21 | 1.28 | 1 |
 SG 2 | c18397_g2 |  | AtMYB13,14,15 |  | myb-related protein Myb4-like [Brachypodium distachyon] | 43 | 72 % | 2E-14 | 5.15 | 1.96 | 1.99 | 0.35 | 0.4220982 |
 SG 2 | c35333_g1 |  | AtMYB13,14,15 |  | MYB transcription factor [Zea mays] | 121 | 87 % | 3E-62 | 1.58 | 4.09 | −1.24 | −0.07 | 1 |
 SG 2 | c36958_g1 |  | AtMYB13,14,15 |  | myb-related protein Myb4 [Zea mays] | 98 | 69 % | 7E-35 | 1.81 | 1.79 | −0.05 | −0.66 | 1 |
 SG 4 | c10735_g1 | LhMYB3 | AtMYB3,4,7,32 | FaMYB1, Am308, Am330 | R2R3-MYB transcriptional factor [Lilium hybrid division I] | 119 | 97 % | 5E-81 | 5.83 | 3.37 | 0.91 | 1.16 | 1 |
 SG 4 | c25442_g1 | LhMYB8 | AtMYB3,4,7,32 | FaMYB1, Am308, Am330 | R2R3-MYB transcriptional factor [Lilium hybrid division I] | 214 | 99 % | 2E-156 | 273.93 | 218.16 | 0.31 | 7.76 | 1 |
 SG 4 | c25442_g2 |  | AtMYB3,4,7,32 | FaMYB1, Am308, Am330 | myb-related protein 308-like [Elaeis guineensis] | 252 | 69 % | 1E-119 | 72.64 | 61.13 | 0.25 | 6.28 | 1 |
 SG 6 | c22900_g1 | LhMYB12 | PAP1,PAP2 | PhAN2 | transcription factor R2R3-MYB [Lilium hybrid division I] | 162 | 95 % | 6E-97 | 276.37 | 216.83 | 0.30 | 7.89 | 1 |
 SG 6 | c24386_g1 | LrMYB15 | PAP1,PAP2 | PhAN2 | transcription factor R2R3-MYB [Lilium regale] | 242 | 88 % | 4E-155 | 7.23 | 15.11 | −1.05 | 3.20 | 0.3424106 |
 SG 6 | c24386_g2 | LhMYB16 | PAP1,PAP2 | PhAN2 | R2R3-MYB transcriptional factor, partial [Lilium hybrid division I] | 240 | 84 % | 5E-75 | 5.47 | 8.71 | −0.69 | 2.32 | 0.9933287 |
 SG 7 | c25442_g3 |  | AtMYB11,12,111 | ZmP | MYB12 [Arabidopsis thaliana] | 287 | 70 % | 1E-72 | 30.92 | 11.36 | 1.49 | 3.84 | 0.3424106 |
 SG 9 | c10215_g1 |  | AtMYB17 | AmMIXTA | Myb domain protein 17 isoform 2 [Theobroma cacao] | 72 | 66 % | 1E-19 | 0.00 | 4.63 | −3.28 | −0.92 | 1 |
 SG 9 | c10215_g2 |  | AtMYB17 | AmMIXTA | myb domain protein 17 [Zostera marina] | 80 | 91 % | 2E-46 | n.d. | n.d. | n.d. | n.d. | n.d. |
 SG 9 | c22634_g1 | LhMYB10 | AtMYB17 | AmMIXTA | R2R3-MYB transcriptional factor, partial [Lilium hybrid division I] | 245 | 98 % | 1E-143 | 7.57 | 11.78 | −0.62 | 2.96 | 0.9933287 |
 SG 9 | c22634_g2 |  | AtMYB17 | AmMIXTA | Transcription factor [Morus notabilis] | 107 | 99 % | 5E-72 | 13.11 | 16.98 | −0.29 | 2.07 | 1 |
 SG 13 | c4482_g2 |  | AtMYB55,86 |  | putative transcription factor MYB55 [Arabidopsis thaliana] | 105 | 96 % | 3E-62 | 2.67 | 1.34 | 0.69 | −0.51 | 1 |
 SG 13 | c16280_g2 |  | AtMYB55,86 |  | MYB transcription factor MYB89 [Glycine max] | 107 | 48 % | 6E-25 | 2.58 | 4.98 | −0.64 | 0.04 | 1 |
 SG 13 | c35026_g1 |  | AtMYB55,86 |  | transcription factor MYB34-like [Nicotiana tomentosiformis] | 86 | 90 % | 2E-50 | 2.17 | 1.79 | 0.42 | −0.55 | 1 |
 SG 18 | c19459_g1 |  | AtMYB65,101 | HvGAMYB | transcription factor GAMYB [Vitis vinifera] | 480 | 43 % | 7E-119 | 5.55 | 4.82 | 0.16 | 2.80 | 1 |
 SG 18 | c32967_g1 |  | AtMYB65,101 | HvGAMYB | transcription factor GAMYB-like [Musa acuminata subsp. malaccensis] | 115 | 67 % | 2E-49 | 2.44 | 2.07 | 0.41 | 0.41 | 1 |
 SG 19 | c7757_g1 | LhMYB2 | AtMYB21,24 | Am305, Am340, PhEOBII | R2R3-MYB transcriptional factor [Lilium hybrid division I] | 191 | 100 % | 4E-142 | 2609.05 | 2336.57 | 0.16 | 11.12 | 1 |
 SG 19 | c23501_g1 | LhMYB1 | AtMYB21,24 | Am305, Am340, PhEOBII | LhMyb [Lilium hybrid division I] | 192 | 99 % | 5E-131 | 2929.08 | 2745.59 | 0.09 | 11.22 | 1 |
 SG 21 | c7270_g1 |  | AtMYB105,117 | MlRCP1 | myb-like protein Q [Musa acuminata subsp. malaccensis] | 156 | 52 % | 3E-18 | 3.36 | 0.32 | 3.04 | 0.02 | 0.3424106 |
 SG 21 | c16635_g1 |  | AtMYB105,117 | MlRCP1 | MYB143 protein [Gossypium hirsutum] | 73 | 70 % | 0.0000004 | 20.94 | 0.95 | 4.16 | 2.15 | 0.00079 |
 SG 22 | c12801_g2 |  | AtMYB44, 70, 73, 77 |  | transcription factor MYB44-like [Vitis vinifera] | 410 | 51 % | 2E-100 | 23.84 | 29.80 | −0.29 | 5.21 | 1 |
 SG 22 | c13168_g1 |  | AtMYB44, 70, 73, 77 |  | MYB transcription factor MYB178 [Glycine max] | 75 | 78 % | 3E-24 | 0.00 | 3.69 | −3.20 | −0.93 | 1 |
 SG 22 | c21029_g1 |  | AtMYB44, 70, 73, 77 |  | sucrose responsive element-binding protein [Elaeis guineensis] | 205 | 61 % | 7E-72 | 5.17 | 13.50 | −1.35 | 2.23 | 0.3424106 |
 SG 22 | c21511_g2 |  | AtMYB44, 70, 73, 77 |  | Myb domain protein 73 [Theobroma cacao] | 222 | 59 % | 4E-55 | 62.90 | 87.74 | −0.45 | 5.24 | 0.9953253 |
 SG 22 | c37985_g1 |  | AtMYB44, 70, 73, 77 |  | transcription factor MYB44-like [Musa acuminata subsp. malaccensis] | 92 | 53 % | 5E-24 | 0.73 | 1.16 | −0.13 | −0.93 | 1 |
 SG 23 | c1544_g1 |  | AtMYB1 |  | myb-related protein B-like [Gossypium raimondii] | 135 | 65 % | 3E-50 | 2.32 | 3.46 | −0.30 | 0.18 | 1 |
 SG 23 | c26297_g1 |  | AtMYB1 |  | transcription factor MYB86 [Cucumis sativus] | 331 | 57 % | 5E-116 | 14.64 | 13.84 | 0.06 | 3.86 | 1 |
 SG 25 | c14426_g1 |  | AtMYB98 |  | transcription factor MYB98-like [Prunus mume] | 77 | 61 % | 1E-23 | 9.25 | 1.90 | 2.24 | −0.35 | 0.7101734 |
 | c14549_g1 |  | AtMYB20, 85 | PhODO1 | protein ODORANT1 [Sesamum indicum] | 125 | 54 % | 4E-36 | 4.46 | 4.21 | −0.01 | 0.35 | 1 |
 | c14549_g2 |  | AtMYB20, 85 | PhODO1 | myb-related protein 315-like [Nicotiana tomentosiformis] | 67 | 88 % | 4E-40 | 0.00 | 7.78 | −4.67 | −0.44 | 0.3424106 |
 | c16655_g1 |  | AtMYB20, 85 | PhODO1 | protein ODORANT1-like [Elaeis guineensis] | 263 | 64 % | 6E-118 | 3.83 | 5.67 | −0.47 | 1.75 | 1 |
 | c28204_g2 |  | AtMYB88,124 |  | Myb124, putative isoform 1 [Theobroma cacao] | 509 | 45 % | 3E-119 | 6.92 | 9.76 | −0.19 | 3.60 | 1 |
 | c24798_g1 |  | AtMYB91/AS1 | AmMYBPHAN | transcription factor AS1 [Populus euphratica] | 345 | 69 % | 3E-165 | 10.58 | 7.27 | 0.52 | 3.44 | 0.9933287 |
R3-MYB type | |||||||||||||
 | c24227_g1 |  | AtMYBL2 |  | transcription repressor MYB4-like [Nelumbo nucifera] | 157 | 42 % | 3E-37 | 4.82 | 3.86 | 0.41 | 0.79 | 1 |
 | c24227_g2 |  | AtMYBL2 |  | myb-related protein 308-like [Phoenix dactylifera] | 157 | 43 % | 3E-34 | 28.20 | 3.00 | 3.29 | 2.42 | 0.00079 |
 | c18278_g2 |  | AtCAPRICE | PhMYBx | transcription factor CPC-like [Nelumbo nucifera] | 90 | 62 % | 6E-23 | 5.87 | 4.64 | 0.28 | −0.13 | 1 |
'Unusual' MYB genes with two or more repeats | |||||||||||||
 | c28856_g1 |  | AtCDC5 |  | cell division cycle 5-like protein [Arabidopsis thaliana] | 1049 | 73 % | 0 | 12.74 | 13.64 | −0.06 | 5.40 | 1 |
 | c23757_g4 |  | AtMYB4R1 |  | myb-like protein L [Phoenix dactylifera] | 197 | 74 % | 3E-98 | 6.93 | 5.83 | −0.20 | 1.21 | 1 |