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Table 2 Annotation and expression of unigenes showing the homology with R2R3-MYB, R3-MYB, and MYB3R genes

From: RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.)

Type and sub-group (SG)a)

Trinity transcript id

Homologous gene in Lilium

Homologous gene in Arabidopsis

Homologous gene in other species

Blastp top hit

Length

Identity

E-value

FPKM (expression) in

logFC

logCPM

FDR

Upper tepals

Tepal bases

MYB3R type

 

c19823_g1

 

AtMYB3R-1

 

myb-related protein 3R-1-like isoform X2 [Phoenix dactylifera]

242

74 %

2E-115

4.24

7.13

−0.61

1.90

1

 

c27498_g5

 

AtMYB3R-3,3R-5

 

myb-related protein 3R-1-like [Musa acuminata subsp. malaccensis]

502

50 %

7E-154

10.74

11.67

−0.11

4.65

1

R2R3-MYB type

 SG 1

c10428_g1

 

AtMYB30,94,96

Am306

R2R3-MYB transcriptional factor, partial [Lilium hybrid division I]

124

75 %

2E-42

2.96

2.18

0.30

−0.14

1

 SG 1

c19652_g1

LhMYB7

AtMYB30,94,96

Am306

R2R3-MYB transcriptional factor, partial [Lilium hybrid division I]

193

99 %

2E-112

6.94

3.00

1.20

1.56

0.5056056

 SG 1

c19652_g2

LhMYB7

AtMYB30,94,96

Am306

R2R3-MYB transcriptional factor, partial [Lilium hybrid division I]

109

100 %

1E-63

1.72

5.00

−1.19

0.26

0.9933287

 SG 1

c23337_g2

LhMYB5

AtMYB30,94,96

Am306

R2R3-MYB transcriptional factor, partial [Lilium hybrid division I]

309

98 %

6E-141

7.72

14.20

−0.85

3.12

0.5775627

 SG 2

c2281_g1

 

AtMYB13,14,15

 

putative MYB transcription factor [Rosa rugosa]

89

83 %

3E-48

10.39

7.12

0.65

1.35

1

 SG 2

c8990_g1

 

AtMYB13,14,15

 

myb-like protein Myb15 [Citrus maxima]

83

83 %

8E-47

1.73

8.46

−2.10

−0.42

0.9933287

 SG 2

c12438_g1

 

AtMYB13,14,15

 

myb-related protein Zm1-like [Elaeis guineensis]

259

51 %

1E-64

14.05

12.72

3.19

2.36

0.004292067

 SG 2

c18397_g1

 

AtMYB13,14,15

 

Myb-related protein Zm1 [Aegilops tauschii]

206

51 %

1E-43

4.60

4.21

0.21

1.28

1

 SG 2

c18397_g2

 

AtMYB13,14,15

 

myb-related protein Myb4-like [Brachypodium distachyon]

43

72 %

2E-14

5.15

1.96

1.99

0.35

0.4220982

 SG 2

c35333_g1

 

AtMYB13,14,15

 

MYB transcription factor [Zea mays]

121

87 %

3E-62

1.58

4.09

−1.24

−0.07

1

 SG 2

c36958_g1

 

AtMYB13,14,15

 

myb-related protein Myb4 [Zea mays]

98

69 %

7E-35

1.81

1.79

−0.05

−0.66

1

 SG 4

c10735_g1

LhMYB3

AtMYB3,4,7,32

FaMYB1, Am308, Am330

R2R3-MYB transcriptional factor [Lilium hybrid division I]

119

97 %

5E-81

5.83

3.37

0.91

1.16

1

 SG 4

c25442_g1

LhMYB8

AtMYB3,4,7,32

FaMYB1, Am308, Am330

R2R3-MYB transcriptional factor [Lilium hybrid division I]

214

99 %

2E-156

273.93

218.16

0.31

7.76

1

 SG 4

c25442_g2

 

AtMYB3,4,7,32

FaMYB1, Am308, Am330

myb-related protein 308-like [Elaeis guineensis]

252

69 %

1E-119

72.64

61.13

0.25

6.28

1

 SG 6

c22900_g1

LhMYB12

PAP1,PAP2

PhAN2

transcription factor R2R3-MYB [Lilium hybrid division I]

162

95 %

6E-97

276.37

216.83

0.30

7.89

1

 SG 6

c24386_g1

LrMYB15

PAP1,PAP2

PhAN2

transcription factor R2R3-MYB [Lilium regale]

242

88 %

4E-155

7.23

15.11

−1.05

3.20

0.3424106

 SG 6

c24386_g2

LhMYB16

PAP1,PAP2

PhAN2

R2R3-MYB transcriptional factor, partial [Lilium hybrid division I]

240

84 %

5E-75

5.47

8.71

−0.69

2.32

0.9933287

 SG 7

c25442_g3

 

AtMYB11,12,111

ZmP

MYB12 [Arabidopsis thaliana]

287

70 %

1E-72

30.92

11.36

1.49

3.84

0.3424106

 SG 9

c10215_g1

 

AtMYB17

AmMIXTA

Myb domain protein 17 isoform 2 [Theobroma cacao]

72

66 %

1E-19

0.00

4.63

−3.28

−0.92

1

 SG 9

c10215_g2

 

AtMYB17

AmMIXTA

myb domain protein 17 [Zostera marina]

80

91 %

2E-46

n.d.

n.d.

n.d.

n.d.

n.d.

 SG 9

c22634_g1

LhMYB10

AtMYB17

AmMIXTA

R2R3-MYB transcriptional factor, partial [Lilium hybrid division I]

245

98 %

1E-143

7.57

11.78

−0.62

2.96

0.9933287

 SG 9

c22634_g2

 

AtMYB17

AmMIXTA

Transcription factor [Morus notabilis]

107

99 %

5E-72

13.11

16.98

−0.29

2.07

1

 SG 13

c4482_g2

 

AtMYB55,86

 

putative transcription factor MYB55 [Arabidopsis thaliana]

105

96 %

3E-62

2.67

1.34

0.69

−0.51

1

 SG 13

c16280_g2

 

AtMYB55,86

 

MYB transcription factor MYB89 [Glycine max]

107

48 %

6E-25

2.58

4.98

−0.64

0.04

1

 SG 13

c35026_g1

 

AtMYB55,86

 

transcription factor MYB34-like [Nicotiana tomentosiformis]

86

90 %

2E-50

2.17

1.79

0.42

−0.55

1

 SG 18

c19459_g1

 

AtMYB65,101

HvGAMYB

transcription factor GAMYB [Vitis vinifera]

480

43 %

7E-119

5.55

4.82

0.16

2.80

1

 SG 18

c32967_g1

 

AtMYB65,101

HvGAMYB

transcription factor GAMYB-like [Musa acuminata subsp. malaccensis]

115

67 %

2E-49

2.44

2.07

0.41

0.41

1

 SG 19

c7757_g1

LhMYB2

AtMYB21,24

Am305, Am340, PhEOBII

R2R3-MYB transcriptional factor [Lilium hybrid division I]

191

100 %

4E-142

2609.05

2336.57

0.16

11.12

1

 SG 19

c23501_g1

LhMYB1

AtMYB21,24

Am305, Am340, PhEOBII

LhMyb [Lilium hybrid division I]

192

99 %

5E-131

2929.08

2745.59

0.09

11.22

1

 SG 21

c7270_g1

 

AtMYB105,117

MlRCP1

myb-like protein Q [Musa acuminata subsp. malaccensis]

156

52 %

3E-18

3.36

0.32

3.04

0.02

0.3424106

 SG 21

c16635_g1

 

AtMYB105,117

MlRCP1

MYB143 protein [Gossypium hirsutum]

73

70 %

0.0000004

20.94

0.95

4.16

2.15

0.00079

 SG 22

c12801_g2

 

AtMYB44, 70, 73, 77

 

transcription factor MYB44-like [Vitis vinifera]

410

51 %

2E-100

23.84

29.80

−0.29

5.21

1

 SG 22

c13168_g1

 

AtMYB44, 70, 73, 77

 

MYB transcription factor MYB178 [Glycine max]

75

78 %

3E-24

0.00

3.69

−3.20

−0.93

1

 SG 22

c21029_g1

 

AtMYB44, 70, 73, 77

 

sucrose responsive element-binding protein [Elaeis guineensis]

205

61 %

7E-72

5.17

13.50

−1.35

2.23

0.3424106

 SG 22

c21511_g2

 

AtMYB44, 70, 73, 77

 

Myb domain protein 73 [Theobroma cacao]

222

59 %

4E-55

62.90

87.74

−0.45

5.24

0.9953253

 SG 22

c37985_g1

 

AtMYB44, 70, 73, 77

 

transcription factor MYB44-like [Musa acuminata subsp. malaccensis]

92

53 %

5E-24

0.73

1.16

−0.13

−0.93

1

 SG 23

c1544_g1

 

AtMYB1

 

myb-related protein B-like [Gossypium raimondii]

135

65 %

3E-50

2.32

3.46

−0.30

0.18

1

 SG 23

c26297_g1

 

AtMYB1

 

transcription factor MYB86 [Cucumis sativus]

331

57 %

5E-116

14.64

13.84

0.06

3.86

1

 SG 25

c14426_g1

 

AtMYB98

 

transcription factor MYB98-like [Prunus mume]

77

61 %

1E-23

9.25

1.90

2.24

−0.35

0.7101734

 

c14549_g1

 

AtMYB20, 85

PhODO1

protein ODORANT1 [Sesamum indicum]

125

54 %

4E-36

4.46

4.21

−0.01

0.35

1

 

c14549_g2

 

AtMYB20, 85

PhODO1

myb-related protein 315-like [Nicotiana tomentosiformis]

67

88 %

4E-40

0.00

7.78

−4.67

−0.44

0.3424106

 

c16655_g1

 

AtMYB20, 85

PhODO1

protein ODORANT1-like [Elaeis guineensis]

263

64 %

6E-118

3.83

5.67

−0.47

1.75

1

 

c28204_g2

 

AtMYB88,124

 

Myb124, putative isoform 1 [Theobroma cacao]

509

45 %

3E-119

6.92

9.76

−0.19

3.60

1

 

c24798_g1

 

AtMYB91/AS1

AmMYBPHAN

transcription factor AS1 [Populus euphratica]

345

69 %

3E-165

10.58

7.27

0.52

3.44

0.9933287

R3-MYB type

 

c24227_g1

 

AtMYBL2

 

transcription repressor MYB4-like [Nelumbo nucifera]

157

42 %

3E-37

4.82

3.86

0.41

0.79

1

 

c24227_g2

 

AtMYBL2

 

myb-related protein 308-like [Phoenix dactylifera]

157

43 %

3E-34

28.20

3.00

3.29

2.42

0.00079

 

c18278_g2

 

AtCAPRICE

PhMYBx

transcription factor CPC-like [Nelumbo nucifera]

90

62 %

6E-23

5.87

4.64

0.28

−0.13

1

'Unusual' MYB genes with two or more repeats

 

c28856_g1

 

AtCDC5

 

cell division cycle 5-like protein [Arabidopsis thaliana]

1049

73 %

0

12.74

13.64

−0.06

5.40

1

 

c23757_g4

 

AtMYB4R1

 

myb-like protein L [Phoenix dactylifera]

197

74 %

3E-98

6.93

5.83

−0.20

1.21

1

  1. a)The grouping follows [51]