Table 1 Atg transcripts present in M. rosenbergii transcriptomes in comparison with Atg genes of mammals and yeast

ULK1 protein kinase complex

ULK1

ATG1

1 (same hit with ULK2)

ATG13/APG13

ATG13

1

FIP200

ATG17

1

ATG101

1

Atg9-WIPI1 complex

ATG9A, B

ATG9

2

WIPI-1,2,3,4 Vps34-beclin1 class III PI3-kinase complex

ATG18

4

PIK3C3/VPS34

VPS34

1

PIK3R4/VPS15

VPS15

3

BECN1

ATG6 (VPS30)

1

ATG14

ATG14

1

UVRAG

VPS38

1

Rubicon

1

AMBRA1

1

Atg12 conjugation

ATG12

ATG12

1

ATG5

ATG5

1

ATG16L1,L2

ATG16

1

ATG7

ATG7

1

ATG10

ATG10

1

LC3/Atg8 conjugation

MAP1LC3B/LC3B

ATG8

1

GABARAP

ATG8

1

GATE-16

ATG8

1

GABARAPL1

ATG8

1 (same hit with GABARAP)

ATG7

ATG7

(see Atg7 above)

ATG3

ATG3

1

ATG4A-D (autophagins 1–4)

ATG4

3

PI(3)P-related proteins

ALFY/WDFY3

1

DFCP1/ZFYVE1

1

FYCO1

2

MTMR14

2

MTMR3

1

Others

ULK2

1

Sequestosome-1(SQSTM-1)/p62

1

beclin 1 associated autophagy related key regulator like

1

ATG2

1