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Table 1 Atg transcripts present in M. rosenbergii transcriptomes in comparison with Atg genes of mammals and yeast

From: Transcriptomic analysis of the autophagy machinery in crustaceans

Autophagy core machinary Mammals Yeasts Number of hit transcript in M. rosenbergii transcriptomes
ULK1 protein kinase complex ULK1 ATG1 1 (same hit with ULK2)
ATG13/APG13 ATG13 1
FIP200 ATG17 1
ATG101   1
Atg9-WIPI1 complex ATG9A, B ATG9 2
WIPI-1,2,3,4 Vps34-beclin1 class III PI3-kinase complex ATG18 4
PIK3C3/VPS34 VPS34 1
PIK3R4/VPS15 VPS15 3
BECN1 ATG6 (VPS30) 1
ATG14 ATG14 1
UVRAG VPS38 1
Rubicon   1
AMBRA1   1
Atg12 conjugation ATG12 ATG12 1
ATG5 ATG5 1
ATG16L1,L2 ATG16 1
ATG7 ATG7 1
ATG10 ATG10 1
LC3/Atg8 conjugation MAP1LC3B/LC3B ATG8 1
GABARAP ATG8 1
GATE-16 ATG8 1
GABARAPL1 ATG8 1 (same hit with GABARAP)
ATG7 ATG7 (see Atg7 above)
ATG3 ATG3 1
ATG4A-D (autophagins 1–4) ATG4 3
PI(3)P-related proteins ALFY/WDFY3   1
DFCP1/ZFYVE1   1
FYCO1   2
MTMR14   2
MTMR3   1
Others ULK2   1
Sequestosome-1(SQSTM-1)/p62   1
beclin 1 associated autophagy related key regulator like   1
ATG2   1
  1. The number of predicted Atg transcripts derived from M. rosenbergii transcriptomes is indicated