Skip to main content

Table 1 Phenotypic variation in different panels and ecotype (indica and japonica panels) contribution to phenotypic variation

From: Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.)

  

AAC

PRO

PV

HPV

CPV

BD

SB

CS

PeT

PTemp

 

Means ± SD1

18.5 ± 3.8

7.8 ± 1.3

260.2 ± 37.6

176.0 ± 27.0

271.6 ± 32.9

84.1 ± 27.3

11.4 ± 35.5

95.1 ± 15.4

6.4 ± 0.2

72.7 ± 3.0

whole

Range

10.2 ~ 30.7

1.6 ~ 14.1

32.7 ~ 347.8

24.2 ~ 245.3

59.6 ~ 371.5

8.4 ~ 179.5

−117.1 ~ 97.2

28.6 ~ 170.6

3.7 ~ 6.9

68.1 ~ 81.5

panel

CV2

20.7

16.0

14.5

15.4

12.1

32.4

311.0

16.2

3.1

4.1

 

R square

0.429

0.030

0.100

0.122

0.084

0.029

0.078

0.365

0.277

0.224

 

P value

<.0001

0.1547

0.0001

<.0001

0.0007

0.1689

0.0014

<.0001

<.0001

<.0001

 

Means ± SD1

24.0 ± 5.8a

7.5 ± 1.4b

254.1 ± 42.0a

169.4 ± 30.0b

281.8 ± 42.9a

84.8 ± 37.0a

27.7 ± 51.8a

112.4 ± 20.1a

6.2 ± 0.2b

75.0 ± 3.2a

indica

Range

12.9 ~ 30.7

1.6 ~ 10.5

155.6 ~ 344.0

107.2 ~ 234.5

191.2 ~ 371.5

40.2 ~ 166.9

−84.5 ~ 97.2

72.5 ~ 170.6

5.7 ~ 6.6

68.1 ~ 80.7

panel

CV2

24.1

18.7

16.5

17.7

15.2

43.6

187.0

17.9

2.9

4.3

 

R square

0.107

0.007

0.372

0.325

0.214

0.092

0.036

0.014

0.131

0.139

 

P value

0.044

0.824

0.002

0.006

0.044

0.286

0.625

0.828

0.021

0.016

 

Means ± SD1

16.7 ± 2.7b

7.9 ± 1.2a

262.6 ± 35.1a

179.2 ± 26.7a

267.78 ± 29.2b

83.4 ± 23.4a

5.2 ± 26.6b

88.4 ± 11.9b

6.4 ± 0.2a

71.9 ± 2.8b

japonica

Range

10.2 ~ 26.7

5.3 ~ 14.1

32.7 ~ 347.8

24.2 ~ 245.3

59.6 ~ 326.5

8.4 ~ 179.5

−117.1 ~ 87.5

28.6 ~ 132.5

3.7 ~ 6.9

68.1 ~ 81.5

panel

CV2

16.0

15.2

13.4

14.9

10.9

28.1

509.6

13.5

3.3

3.9

 

R square

0.119

0.008

0.001

0.005

0.016

0.003

0.020

0.146

0.026

0.050

 

P value

<.0001

0.537

0.937

0.698

0.287

0.774

0.195

<.0001

0.127

0.017

  1. 1. SD: standard deviation; 2. CV: coefficient of variation; 3: different letters mean significant difference between indica and japonica panels (P < 0.05)