Skip to main content

Table 1 Phenotypic variation in different panels and ecotype (indica and japonica panels) contribution to phenotypic variation

From: Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.)

   AAC PRO PV HPV CPV BD SB CS PeT PTemp
  Means ± SD1 18.5 ± 3.8 7.8 ± 1.3 260.2 ± 37.6 176.0 ± 27.0 271.6 ± 32.9 84.1 ± 27.3 11.4 ± 35.5 95.1 ± 15.4 6.4 ± 0.2 72.7 ± 3.0
whole Range 10.2 ~ 30.7 1.6 ~ 14.1 32.7 ~ 347.8 24.2 ~ 245.3 59.6 ~ 371.5 8.4 ~ 179.5 −117.1 ~ 97.2 28.6 ~ 170.6 3.7 ~ 6.9 68.1 ~ 81.5
panel CV2 20.7 16.0 14.5 15.4 12.1 32.4 311.0 16.2 3.1 4.1
  R square 0.429 0.030 0.100 0.122 0.084 0.029 0.078 0.365 0.277 0.224
  P value <.0001 0.1547 0.0001 <.0001 0.0007 0.1689 0.0014 <.0001 <.0001 <.0001
  Means ± SD1 24.0 ± 5.8a 7.5 ± 1.4b 254.1 ± 42.0a 169.4 ± 30.0b 281.8 ± 42.9a 84.8 ± 37.0a 27.7 ± 51.8a 112.4 ± 20.1a 6.2 ± 0.2b 75.0 ± 3.2a
indica Range 12.9 ~ 30.7 1.6 ~ 10.5 155.6 ~ 344.0 107.2 ~ 234.5 191.2 ~ 371.5 40.2 ~ 166.9 −84.5 ~ 97.2 72.5 ~ 170.6 5.7 ~ 6.6 68.1 ~ 80.7
panel CV2 24.1 18.7 16.5 17.7 15.2 43.6 187.0 17.9 2.9 4.3
  R square 0.107 0.007 0.372 0.325 0.214 0.092 0.036 0.014 0.131 0.139
  P value 0.044 0.824 0.002 0.006 0.044 0.286 0.625 0.828 0.021 0.016
  Means ± SD1 16.7 ± 2.7b 7.9 ± 1.2a 262.6 ± 35.1a 179.2 ± 26.7a 267.78 ± 29.2b 83.4 ± 23.4a 5.2 ± 26.6b 88.4 ± 11.9b 6.4 ± 0.2a 71.9 ± 2.8b
japonica Range 10.2 ~ 26.7 5.3 ~ 14.1 32.7 ~ 347.8 24.2 ~ 245.3 59.6 ~ 326.5 8.4 ~ 179.5 −117.1 ~ 87.5 28.6 ~ 132.5 3.7 ~ 6.9 68.1 ~ 81.5
panel CV2 16.0 15.2 13.4 14.9 10.9 28.1 509.6 13.5 3.3 3.9
  R square 0.119 0.008 0.001 0.005 0.016 0.003 0.020 0.146 0.026 0.050
  P value <.0001 0.537 0.937 0.698 0.287 0.774 0.195 <.0001 0.127 0.017
  1. 1. SD: standard deviation; 2. CV: coefficient of variation; 3: different letters mean significant difference between indica and japonica panels (P < 0.05)