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Table 2 Loci detected for eating and cooking qualities in the whole panel

From: Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.)

  Chr. Position P value MAFa R squareb
AAC 6 1765761 3.87 × 10−18 0.288 0.087
PRO 5 13312843 6.43 × 10−10 0.058 0.153
11 22562237 2.14 × 10−8 0.071 0.124
PV 5 7756614 3.40 × 10−6 0.235 0.070
6 1765761 3.50 × 10−7 0.285 0.085
HPV 5 7944999 2.25 × 10−5 0.071 0.067
6 1750498 1.37 × 10−6 0.077 0.088
7 3359832 9.88 × 10−5 0.199 0.056
9 17538294 7.44 × 10−5 0.071 0.058
CPV 1 31640680 1.05 × 10−6 0.277 0.087
6 1750498 6.88 × 10−8 0.077 0.108
9 17539188 1.53 × 10−6 0.071 0.084
BD 6 1765761 3.24 × 10−8 0.285 0.105
7 1967427 4.05 × 10−6 0.173 0.071
7 26540950 3.34 × 10−6 0.093 0.073
SB 4 24293919 3.44 × 10−7 0.166 0.069
6 1765761 1.69 × 10−2 0.285 0.140
7 1967427 2.11 × 10−7 0.173 0.072
7 25326697 5.68 × 10−7 0.080 0.066
CS 1 30634461 2.42 × 10−6 0.261 0.041
6 1765761 8.64 × 10−8 0.285 0.054
9 15474876 4.59 × 10−6 0.215 0.039
PeT 1 31330790 1.39 × 10−7 0.265 0.087
2 18003109 6.84 × 10−8 0.268 0.091
5 8042699 1.06 × 10−6 0.173 0.074
6 21450052 1.67 × 10−7 0.058 0.085
8 21593355 2.64 × 10−7 0.270 0.082
PTemp 6 7002095 1.99 × 10−9 0.219 0.065
12 17937512 1.59 × 10−6 0.157 0.041
  1. a: MAF: minor allele frequency; b: R square was calculated by R square of model with SNP minus R square of model without SNP