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Table 2 Percentage of high-quality reads best mapped to the three reference sequences and number of SNPs identified accordingly for the female parent ‘I-69’ and the male parent ‘L-3’

From: De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies

Parent

P. deltoides

P. simonii

P. trichocarpa

Mapped reads (%)

SNP

Mapped reads (%)

SNP

Mapped reads (%)

SNP

I-69

71.34

423,680

56.77

4,955,722

56.23

6,597,917

L-3

56.55

4,721,160

76.77

414,174

58.57

7,018,418

Both

 

168,530

 

142,446

 

1,933,395

Total

 

4,976,310

 

5,227,450

 

11,682,940