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Table 2 Percentage of high-quality reads best mapped to the three reference sequences and number of SNPs identified accordingly for the female parent ‘I-69’ and the male parent ‘L-3’

From: De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies

Parent P. deltoides P. simonii P. trichocarpa
Mapped reads (%) SNP Mapped reads (%) SNP Mapped reads (%) SNP
I-69 71.34 423,680 56.77 4,955,722 56.23 6,597,917
L-3 56.55 4,721,160 76.77 414,174 58.57 7,018,418
Both   168,530   142,446   1,933,395
Total   4,976,310   5,227,450   11,682,940