|
Names of TE models
|
a
|
b
|
ca
|
d
|
e
|
|---|
|
CR1
|
308
|
LINE
|
413857
|
66.4707
|
11.8457
|
|
Ancestral_LTR_group_1
|
3
|
LTR
|
86
|
0.0138
|
0.0034
|
|
Ancestral_LTR_group_2
|
1
|
LTR
|
22
|
0.0035
|
0.0013
|
|
Ancestral_LTR_group_3
|
1
|
LTR
|
40
|
0.0064
|
0.0012
|
|
Ancestral_LTR_group_4
|
1
|
LTR
|
308
|
0.0495
|
0.0119
|
|
BIRDDAWG
|
10
|
LTR
|
6238
|
1.0019
|
0.2525
|
|
EAV
|
1
|
LTR
|
191
|
0.0307
|
0.0212
|
|
EAV-HP
|
7
|
LTR
|
765
|
0.1229
|
0.0496
|
|
ERV2
|
2
|
LTR
|
426
|
0.0684
|
0.0209
|
|
ERV7
|
10
|
LTR
|
2885
|
0.4634
|
0.1061
|
|
ERV11
|
1
|
LTR
|
512
|
0.0822
|
0.0168
|
|
Kronos
|
46
|
LTR
|
30732
|
4.9359
|
0.7377
|
|
putative_LTR_group4
|
2
|
LTR
|
835
|
0.1341
|
0.0137
|
|
putative_LTR_group9
|
1
|
LTR
|
170
|
0.0273
|
0.0017
|
|
putative_LTR_group12
|
17
|
LTR
|
1797
|
0.2886
|
0.05
|
|
putative_LTR_group22
|
3
|
LTR
|
1219
|
0.1958
|
0.0257
|
|
putative_LTR_group28
|
2
|
LTR
|
367
|
0.0589
|
0.0116
|
|
putative_LTR_group30
|
13
|
LTR
|
3847
|
0.6179
|
0.0996
|
|
retroCalimero
|
1
|
LTR
|
826
|
0.1327
|
0.0540
|
|
retroSaturnin
|
1
|
LTR
|
161
|
0.0259
|
0.0118
|
|
retroTux
|
2
|
LTR
|
2490
|
0.3999
|
0.1243
|
|
Soprano
|
19
|
LTR
|
3014
|
0.4841
|
0.1171
|
|
Charlie
|
3
|
TIR
|
37319
|
5.9939
|
0.5868
|
|
Charlie-Galluhop
|
5
|
TIR
|
67691
|
10.872
|
1.0296
|
|
Galluhop
|
2
|
TIR
|
4588
|
0.7369
|
0.1198
|
|
Mariner1_GG
|
10
|
TIR
|
5686
|
0.9132
|
0.1491
|
|
Hitchcock
|
4
|
undefined
|
27033
|
4.3418
|
0.4182
|
|
undetermined_group_1
|
3
|
undefined
|
2219
|
0.3564
|
0.0773
|
|
undetermined_group_2
|
2
|
undefined
|
1030
|
0.1654
|
0.0165
|
|
undetermined_group_3
|
2
|
undefined
|
174
|
0.0279
|
0.0045
|
|
undetermined_group_4
|
4
|
undefined
|
2550
|
0.4096
|
0.0423
|
|
undetermined_group_5
|
2
|
undefined
|
134
|
0.0215
|
0.0036
|
|
undetermined_group_6
|
1
|
undefined
|
372
|
0.0597
|
0.0100
|
|
Z_rep
|
9
|
undefined
|
3032
|
0.487
|
0.1476
|
|
Total
|
499
| |
622616
|
100
|
16.1832b
|
- a, Number of consensus; b, TE types; c, Total number of TE copies; d, Percentage of the total number of TE copies; e, Percentage of chromosome coverage; aPost stack resolving and annotation merging are called copies all complete elements, internally deleted elements; 5' or 3' truncated elements and elements truncated at both ends (i.e. internal regions of a TE devoid of ends). bthis coverage value was more elevated than the 15.7 % indicated in the main text because the coverage corresponding to the small TE copies nested in larger TEs were not removed for these calculations
