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Table 2 Sequencing and CAP3 assembly statistics of Spartina alterniflora transcriptome

From: Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

Library

Total no. of reads sequenced

Reads assembled into contigs

Reads as singlets

% redundancya

Total unigenes

Leaf Control

239,851

27,691

45,861

80.87 %

73,552

Leaf Stress

219,968

24,237

44,109

79.94 %

68,346

Root Control

215,127

15,792

56,407

73.77 %

72,199

Root Stress

95,744

5411

53,952

43.64 %

59,363

Total

770,690

73,131

200,329

 

273,460

  1. aRedundancy calculated as the number of reads assembled/total number of reads