Skip to main content

Advertisement

Table 2 Sequencing and CAP3 assembly statistics of Spartina alterniflora transcriptome

From: Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

Library Total no. of reads sequenced Reads assembled into contigs Reads as singlets % redundancya Total unigenes
Leaf Control 239,851 27,691 45,861 80.87 % 73,552
Leaf Stress 219,968 24,237 44,109 79.94 % 68,346
Root Control 215,127 15,792 56,407 73.77 % 72,199
Root Stress 95,744 5411 53,952 43.64 % 59,363
Total 770,690 73,131 200,329   273,460
  1. aRedundancy calculated as the number of reads assembled/total number of reads