Fig. 5
From: Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies
Linear genome map of three circularly permuted phages from the E4 cluster, which package chromosomes via the headful strategy. a Only Sf6 is arranged correctly. The large terminase protein is outlined in orange. Relative to phage SF6, APSE-1 and CUS-3 are arranged incorrectly and CUS-3 is also reverse-complemented. Lines connecting CUS-3 and SF6 indicate nucleotide homology. b Using DNA Master, APSE-1 and CUS-3 were rearranged and reversed complemented and these new files were reanalyzed using Phamerator for comparison. Original gene numbers were preserved