TY - JOUR AU - Ingvarsson, P. K. PY - 2008 DA - 2008// TI - Molecular evolution of synonymous codon usage in Populus JO - BMC Evol Biol VL - 8 UR - https://doi.org/10.1186/1471-2148-8-307 DO - 10.1186/1471-2148-8-307 ID - Ingvarsson2008 ER - TY - JOUR AU - Lavner, Y. AU - Kotlar, D. PY - 2005 DA - 2005// TI - Codon bias as a factor in regulating expression via translation rate in the human genome JO - Gene VL - 345 UR - https://doi.org/10.1016/j.gene.2004.11.035 DO - 10.1016/j.gene.2004.11.035 ID - Lavner2005 ER - TY - JOUR AU - Jia, J. AU - Xue, Q. PY - 2009 DA - 2009// TI - Codon usage biases of transposable elements and host nuclear genes in Arabidopsis thaliana and Oryza sativa JO - Genomics Proteomics Bioinformatics VL - 7 UR - https://doi.org/10.1016/S1672-0229(08)60047-9 DO - 10.1016/S1672-0229(08)60047-9 ID - Jia2009 ER - TY - JOUR AU - Baeza, M. AU - Alcaino, J. AU - Barahona, S. AU - Sepulveda, D. AU - Cifuentes, V. PY - 2015 DA - 2015// TI - Codon usage and codon context bias in Xanthophyllomyces dendrorhous JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-1493-5 DO - 10.1186/s12864-015-1493-5 ID - Baeza2015 ER - TY - JOUR AU - Yang, X. AU - Luo, X. N. AU - Cai, X. P. PY - 2014 DA - 2014// TI - Analysis of codon usage pattern in Taenia saginata based on a transcriptome dataset JO - Parasites Vectors VL - 7 UR - https://doi.org/10.1186/s13071-014-0527-1 DO - 10.1186/s13071-014-0527-1 ID - Yang2014 ER - TY - JOUR AU - Duret, L. PY - 2002 DA - 2002// TI - Evolution of synonymous codon usage in metazoans JO - Curr Opin Genet Dev VL - 12 UR - https://doi.org/10.1016/S0959-437X(02)00353-2 DO - 10.1016/S0959-437X(02)00353-2 ID - Duret2002 ER - TY - JOUR AU - Duan, X. AU - Yi, S. AU - Guo, X. AU - Wang, W. PY - 2015 DA - 2015// TI - A comprehensive analysis of codon usage patterns in blunt snout bream (Megalobrama amblycephala) based on RNA-Seq Data JO - Int J Mol Sci VL - 16 UR - https://doi.org/10.3390/ijms160611996 DO - 10.3390/ijms160611996 ID - Duan2015 ER - TY - JOUR AU - Duret, L. AU - Mouchiroud, D. PY - 1999 DA - 1999// TI - Expression pattern, and surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis JO - Proc Natl Acad Sci U S A VL - 96 UR - https://doi.org/10.1073/pnas.96.8.4482 DO - 10.1073/pnas.96.8.4482 ID - Duret1999 ER - TY - JOUR AU - Tsai, C. J. AU - Sauna, Z. E. AU - Kimchi Sarfaty, C. AU - Ambudkar, S. V. AU - Gottesman, M. M. AU - Nussinov, R. PY - 2008 DA - 2008// TI - Synonymous mutations and ribosome stalling can lead to altered folding pathways and distinct minima JO - J Mol Biol VL - 383 UR - https://doi.org/10.1016/j.jmb.2008.08.012 DO - 10.1016/j.jmb.2008.08.012 ID - Tsai2008 ER - TY - JOUR AU - Marin, M. PY - 2008 DA - 2008// TI - Folding at the rhythm of the rare codon beat JO - Biotechnol J VL - 3 UR - https://doi.org/10.1002/biot.200800089 DO - 10.1002/biot.200800089 ID - Marin2008 ER - TY - JOUR AU - Xiao, J. F. AU - Yu, J. PY - 2007 DA - 2007// TI - A scenario on the stepwise evolution of the genetic code JO - Genomics Proteomics Bioinformatics VL - 5 UR - https://doi.org/10.1016/S1672-0229(08)60001-7 DO - 10.1016/S1672-0229(08)60001-7 ID - Xiao2007 ER - TY - JOUR AU - Bulmer, M. PY - 1991 DA - 1991// TI - The selection-mutation-drift theory of synonymous codon usage JO - Genetics VL - 129 ID - Bulmer1991 ER - TY - JOUR AU - Shah, P. AU - Gilchrist, M. A. PY - 2011 DA - 2011// TI - Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1016719108 DO - 10.1073/pnas.1016719108 ID - Shah2011 ER - TY - JOUR AU - Supek, F. AU - Skunca, N. AU - Repar, J. AU - Vlahovicek, K. AU - Smuc, T. PY - 2010 DA - 2010// TI - Translational selection is ubiquitous in prokaryotes JO - Plos Genetics VL - 6 UR - https://doi.org/10.1371/journal.pgen.1001004 DO - 10.1371/journal.pgen.1001004 ID - Supek2010 ER - TY - JOUR AU - Palidwor, G. A. AU - Perkins, T. J. AU - Xia, X. PY - 2010 DA - 2010// TI - A general model of codon bias due to GC mutational bias JO - Plos One VL - 5 UR - https://doi.org/10.1371/journal.pone.0013431 DO - 10.1371/journal.pone.0013431 ID - Palidwor2010 ER - TY - JOUR AU - Hambuch, T. M. AU - Parsch, J. PY - 2005 DA - 2005// TI - Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression JO - Genetics VL - 170 UR - https://doi.org/10.1534/genetics.104.038109 DO - 10.1534/genetics.104.038109 ID - Hambuch2005 ER - TY - JOUR AU - Hu, J. AU - Zhao, X. AU - Zhang, Z. AU - Yu, J. PY - 2007 DA - 2007// TI - Compositional dynamics of guanine and cytosine content in prokaryotic genomes JO - Res Microbiol VL - 158 UR - https://doi.org/10.1016/j.resmic.2007.02.007 DO - 10.1016/j.resmic.2007.02.007 ID - Hu2007 ER - TY - JOUR AU - Akashi, H. PY - 1997 DA - 1997// TI - Codon bias evolution in Drosophila. Population genetics of mutation-selection drift JO - Gene VL - 205 UR - https://doi.org/10.1016/S0378-1119(97)00400-9 DO - 10.1016/S0378-1119(97)00400-9 ID - Akashi1997 ER - TY - JOUR AU - Goodarzi, H. AU - Torabi, N. AU - Najafabadi, H. S. AU - Archetti, M. PY - 2008 DA - 2008// TI - Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons JO - Gene VL - 407 UR - https://doi.org/10.1016/j.gene.2007.09.020 DO - 10.1016/j.gene.2007.09.020 ID - Goodarzi2008 ER - TY - JOUR AU - Berg, O. G. PY - 1996 DA - 1996// TI - Selection intensity for codon bias and the effective population size of Escherichia coli JO - Genetics VL - 142 ID - Berg1996 ER - TY - JOUR AU - Prat, Y. AU - Fromer, M. AU - Linial, N. AU - Linial, M. PY - 2009 DA - 2009// TI - Codon usage is associated with the evolutionary age of genes in metazoan genomes JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-285 DO - 10.1186/1471-2148-9-285 ID - Prat2009 ER - TY - JOUR AU - Sharp, P. M. AU - Matassi, G. PY - 1994 DA - 1994// TI - Codon usage and genome evolution JO - Curr Opin Genet Dev VL - 4 UR - https://doi.org/10.1016/0959-437X(94)90070-1 DO - 10.1016/0959-437X(94)90070-1 ID - Sharp1994 ER - TY - JOUR AU - Qin, H. AU - Wu, W. B. AU - Comeron, J. M. AU - Kreitman, M. AU - Li, W. H. PY - 2004 DA - 2004// TI - Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes JO - Genetics VL - 168 UR - https://doi.org/10.1534/genetics.104.030866 DO - 10.1534/genetics.104.030866 ID - Qin2004 ER - TY - JOUR AU - Kadlec, J. AU - Loureiro, S. AU - Abrescia, N. G. A. AU - Stuart, D. I. AU - Jones, I. M. PY - 2008 DA - 2008// TI - The postfusion structure of baculovirus gp64 supports a unified view of viral fusion machines JO - Nat Struct Mol Biol VL - 15 UR - https://doi.org/10.1038/nsmb.1484 DO - 10.1038/nsmb.1484 ID - Kadlec2008 ER - TY - JOUR AU - Blissard, G. W. AU - Wenz, J. R. PY - 1992 DA - 1992// TI - Baculovirus gp64 envelope glycoprotein is sufficient to mediate pH-dependent membrane fusion JO - J Virol VL - 66 ID - Blissard1992 ER - TY - JOUR AU - Lang, C. Y. AU - Song, J. H. AU - Chen, X. W. PY - 2005 DA - 2005// TI - The GP64 protein of Autographa californica multiple nucleopolyhedrovirus rescues Helicoverpa armigera nucleopolyhedrovirus transduction in mammalian cells JO - J Gen Virol VL - 86 UR - https://doi.org/10.1099/vir.0.80857-0 DO - 10.1099/vir.0.80857-0 ID - Lang2005 ER - TY - JOUR AU - Monsma, S. A. AU - Oomens, A. G. P. AU - Blissard, G. W. PY - 1996 DA - 1996// TI - The GP64 envelope fusion protein is an essential baculovirus protein required for cell-to-cell transmission of infection JO - J Virol VL - 70 ID - Monsma1996 ER - TY - JOUR AU - Jiang, L. AU - Xia, Q. PY - 2014 DA - 2014// TI - The progress and future of enhancing antiviral capacity by transgenic technology in the silkworm Bombyx mori JO - Insect Biochem Mol Biol VL - 48 UR - https://doi.org/10.1016/j.ibmb.2014.02.003 DO - 10.1016/j.ibmb.2014.02.003 ID - Jiang2014 ER - TY - JOUR AU - Jiang, L. AU - Zhao, P. AU - Wang, G. AU - Cheng, T. AU - Yang, Q. AU - Jin, S. AU - Lin, P. AU - Xiao, Y. AU - Sun, Q. AU - Xia, Q. PY - 2013 DA - 2013// TI - Comparision of factors that may affect the inhibitory efficacy of transgenic RNAi targeting of baculoviral genes in silkworm, Bombyx mori JO - Antiviral Res VL - 97 UR - https://doi.org/10.1016/j.antiviral.2012.12.020 DO - 10.1016/j.antiviral.2012.12.020 ID - Jiang2013 ER - TY - JOUR AU - Jia, X. AU - Liu, S. AU - Zheng, H. AU - Li, B. AU - Qi, Q. AU - Wei, L. AU - Zhao, T. AU - He, J. AU - Sun, J. PY - 2015 DA - 2015// TI - Non-uniqueness of factors constraint on the codon usage in Bombyx mori JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-1596-z DO - 10.1186/s12864-015-1596-z ID - Jia2015 ER - TY - JOUR AU - Kawabe, A. AU - Miyashita, N. T. PY - 2003 DA - 2003// TI - Patterns of codon usage bias in three dicot and four monocot plant species JO - Genes Genet Syst VL - 78 UR - https://doi.org/10.1266/ggs.78.343 DO - 10.1266/ggs.78.343 ID - Kawabe2003 ER - TY - JOUR AU - Peixoto, L. AU - Fernandez, V. AU - Musto, H. PY - 2004 DA - 2004// TI - The effect of expression levels on codon usage in Plasmodium falciparum JO - Parasitology VL - 128 UR - https://doi.org/10.1017/S0031182003004517 DO - 10.1017/S0031182003004517 ID - Peixoto2004 ER - TY - JOUR AU - Zhao, X. AU - Huo, K. K. AU - Li, Y. Y. PY - 2000 DA - 2000// TI - Synonymous codon usage in Pichia pastoris JO - Chin J Biotechnol VL - 16 ID - Zhao2000 ER - TY - JOUR AU - Tao, P. AU - Dai, L. AU - Luo, M. AU - Tang, F. AU - Tien, P. AU - Pan, Z. PY - 2009 DA - 2009// TI - Analysis of synonymous codon usage in classical swine fever virus JO - Virus Genes VL - 38 UR - https://doi.org/10.1007/s11262-008-0296-z DO - 10.1007/s11262-008-0296-z ID - Tao2009 ER - TY - JOUR AU - Wright, F. PY - 1990 DA - 1990// TI - The 'effective number of codons' used in a gene JO - Gene VL - 87 UR - https://doi.org/10.1016/0378-1119(90)90491-9 DO - 10.1016/0378-1119(90)90491-9 ID - Wright1990 ER - TY - JOUR AU - Qiu, S. AU - Bergero, R. AU - Zeng, K. AU - Charlesworth, D. PY - 2011 DA - 2011// TI - Patterns of codon usage bias in Silene latifolia JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msq251 DO - 10.1093/molbev/msq251 ID - Qiu2011 ER - TY - JOUR AU - Rahman, M. M. AU - Gopinathan, K. P. PY - 2003 DA - 2003// TI - Characterization of the gene encoding the envelope fusion glycoprotein GP64 from Bombyx mori nucleopolyhedrovirus JO - Virus Res VL - 94 UR - https://doi.org/10.1016/S0168-1702(03)00123-0 DO - 10.1016/S0168-1702(03)00123-0 ID - Rahman2003 ER -