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Table 3 Correlation coefficients between the position of genes along the first two major axes with index of glycoprotein genes’ codon usage and synonymous codon usage bias

From: Analysis of codon usage bias of envelope glycoprotein genes in nuclear polyhedrosis virus (NPV) and its relation to evolution

  Length GC GC1 GC2 GC3 GC3s A3s T3s C3s G3s ENC CAI Axis1
GC −0.353             
GC1 −0.498* 0.818**            
GC2 −0.672** 0.626** 0.730**           
GC3 −0.208 0.944** 0.685** 0.376          
GC3s −0.208 0.944** 0.685** 0.376 1.000**         
A3s 0.207 −0.901** −0.601** −0.334 −0.959** −0.959**        
T3s 0.283 −0.961** −0.754** −0.455 −0.973** −0.973** 0.913**       
C3s −0.308 0.973** 0.771** 0.502* 0.971** 0.971** −0.913** −0.979**      
G3s −0.099 0.866** 0.571** 0.211 0.946** 0.946** −0.973** −0.911** 0.897**     
ENC 0.491* −0.880** −0.722** −0.609** −0.822** −0.822** 0.763** 0.858** −0.899** −0.709**    
CAI 0.485* −0.229 −0.142 −0.364 −0.154 −0.154 0.183 0.209 −0.186 −0.158 0.142   
Axis1 −0.198 0.938** 0.688** 0.378 0.996** 0.996** −0.957** −0.969** 0.965** 0.948** −0.806** 0.361  
Axis2 0.760** −0.152 −0.334 −0.671** 0.007 0.007 −0.032 0.044 −0.110 0.203 0.370 0.152 0.018
  1. ** p < 0.01. * p < 0.05