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Table 2 Differentially expressed homeobox genes and other transcription factors

From: A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

Gene id

Annotation

Adjusted p-value

CCC

Overall side trend

Tmax relative to T = 0a (Hours)

Side of max change/Fold change(Log2)

Fold change (Log2)

Homeobox genes

v1g184843

Retinal homeobox protein rx-like

0.000375

−0.43

Oral

Hour 72

Physa

2.95

v1g127828

Homeobox protein nkx-(Nk2.2-like)

0.000189

−0.24

physa

Hour 72

Physa

2.43

v1g208035

NK-4 homeobox protein (NvNK-4)

0.000174

−0.14

physa

Hour 8

Physa

1.74

v1g130873

Homeobox protein six3 (NvSix3/6)

1.58E-06

−0.12

physa

Hour 72

Physa

2.01

v1g213735

NvOtxC

8.12E-11

−0.08

physa

Hour 72

Physa

4.72

v1g128302

MoxB (NvMox2)

8.11E-07

−0.07

Oral

Hour 72

Oral

5.73

v1g128296

Homeobox protein mox-2-like (NvMoxD)

4.21E-11

0

Oral

Hour 72

Oral

6.85

v1g128275

Homeobox protein mox-1-like (NvMoxA)

2.02E-07

0.01

Oral

Hour 72

Oral

4.41

v1g128289

Homeobox protein mox-1 (NvMoxC)

1.36E-14

0.07

Oral

Hour 24

Oral

6.65

v1g79707

Diencephalon mesencephalon homeobox protein 1

4.7E-10

0.11

Oral

Hour 24

Oral

4.28

Other transcription factors

v1g28237

Transcription factor sp5

7.14E-07

−0.17

Oral

Hour 24

Oral

2.98

v1g200081

t-box transcription factor tbx15

1.64E-05

−0.05

Oral

Hour 72

Oral

4.03

v1g187332

Forkhead box protein b1 (NvFoxB)

4.09E-07

−0.03

Oral

Hour 72

Oral

2.97

v1g165603

Forkhead domain protein D1 (NvFoxD1)

0.02904

−0.03

physa

Hour 72

Oral

3.54

v1g67043

Forkhead box protein l2

0.0325

−0.01

physa

Hour 8

Physa

1.86

v1g88753

t-box transcription factor tbx18

0.03405

0

Oral

Hour 72

Oral

3.99

v1g235967

Transcription factor sox-14 (NvSox1)

3.13E-06

0.11

Oral

Hour 72

Oral

2.22

v1g211452

ets translocation variant 5 isoform 1

0.03352

0.2

Oral

Hour 24

Oral

1.94

v1g161959

Hypoxia-inducible factor 1-alpha isoform 2

0.04308

0.2

physa

Hour 72

Physa

1.19

v1g101900

Transcription factor sp5

3.11E-05

0.2

physa

Hour 72

Physa

2.09

  1. Genes with low CCC values were sorted by their adjusted time-effect p-value. The column “overall side trend” indicates the side with an overall higher level of expression during regeneration. The next columns show the hour of highest change in expression level as compared to hour 0 (Tmax relative to T = 0), the side in which it is observed (Side of max change), and the level of change in expression (Fold change (Log2)). The other columns contain the hour of overall largest change during regeneration (Time interval of max change) and the side (Side of Max change) and level (Fold change (Log2)) of this change
  2. aHour of maximal change relative to time 0