Fig. 3

Differentially-regulated genes identified through domain analysis with homology to genes with roles in pathogenesis. For each of the 802 differentially expressed genes identified from RNA-Seq, a blastp search was done, and conserved protein domains were identified. The number of genes with higher expression in the infected leaf tissue or in culture medium from each category of genes with roles in pathogenesis in other species was determined and is indicated in the bar chart. Green bars = genes more highly expressed in infected leaf tissue relative to mycelium grown in culture medium; Blue bars = genes with lower expression in infected leaf tissue