Skip to main content

Table 2 Genes with lowest expression in infected leaf tissue compared to culture medium as determined by log2FC

From: Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes

Gene ID Protein ID Predicted function Log2FC
fgenesh1_pm.2_#_327 186279 Hypothetical, no conserved domains −7.1
estExt_Genewise1Plus.C_90903 157466 Cysteine synthase −6.8
estExt_fgenesh1_kg.C_20418 210593 Hypothetical, no conserved domains −6.8
gw1.2.3679.1 120453 Heme peroxidase −6.7
estExt_fgenesh1_pm.C_60071 204084 Hypothetical, no conserved domains −6.7
fgenesh1_kg.1_#_500_#_4410656:1 181367 Hypothetical, with some homology to phosphate carrier protein −6.7
fgenesh1_pg.1_#_1546 193207 Hypothetical, no conserved domains −6.4
fgenesh1_pm.2_#_99 186051 α/β-hydroxylase −6.4
estExt_fgenesh1_pg.C_80340 216449 Hypothetical, with CFEM domain −6.3
Mycfi1.e_gw1.1.178.1 26018 Cytochrome P450 −6.2
Mycfi1.estExt_fgenesh1_pg.C_160286 88531 Hypothetical, no conserved domains −6.2
Mycfi1.e_gw1.3.802.1 31919 FAD dependent oxidoreductase −6.1
Genemark.2479_g 171467 Hypothetical, no conserved domains −6.1
estExt_Genemark.C_80180 208708 2-oxoglutarate and Fe(II)-dependent oxygenase superfamily −6.1
estExt_fgenesh1_kg.C_80203 212291 Glutamine amidotransferase −6.0
estExt_fgenesh1_kg.C_30187 210875 Copper transporter −5.9
estExt_fgenesh1_kg.C_50238 211639 Hypothetical, no conserved domains −5.8
estExt_fgenesh1_kg.C_20200 210380 Hypothetical, no conserved domains −5.8
estExt_fgenesh1_kg.C_20513 210685 Hypothetical, no conserved domains −5.8
Mycfi1.estExt_Genewise1.C_12242 48579 Cupredoxin −5.8
  1. Table indicates the JGI gene and protein IDs, the predicted function of the encoded protein based on blast and conserved domains, and the log2FC value
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us