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Fig. 4 | BMC Genomics

Fig. 4

From: Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera

Fig. 4

Target plots (t-plots) of six identified known miRNA targets using degradome sequencing. The red lines indicate signatures consistent with miRNA-directed cleavage. a Nnu-miR156a slicing NNU_02903-RA at nt 1107(SPL17: Squamosa promoter-binding-like protein 17). b Nnu-miR159b slicing NNU_10896-RA at nt 1284 (GAM1: Transcription factor GAMYB). c Nnu-miR160a slicing NNU_12564-RA at nt 1549 (ARF18: Auxin response factor 18). d Nnu-miR169a slicing NNU_09768-RA at nt 1642 (NFYA10: Nuclear transcription factor Y subunit A-10). e Nnu-miR319c slicing NNU_00026-RA at nt 2081(TCP2: Transcription factor TCP2). f Nnu-miR393a-5p slicing NNU_01291-RA at nt 1689 (TIR1: Protein TRANSPORT INHIBITOR RESPONSE 1). "alignment score" is the score for mismatch. Score = 0 represents perfect match and G:U = 0.5

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BMC Genomics

ISSN: 1471-2164

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