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Table 1 Identification of phage/plasmid protospacers

From: Comparative genomic analysis identifies structural features of CRISPR-Cas systems in Riemerella anatipestifer

Spacer Number

Description of protospacer

Position of protospacer

Similarity

16

Enterobacteria phage phi92

146275-146304

87 %

116

Riemerella phage RAP44

42519–42548

100 %

120

Riemerella phage RAP44/Deferribacter desulfuricans SSM1 plasmid megaplasmid pDF308 DNA

42842–42871/80620–80649

87 %/87 %

134

Riemerella phage RAP44

8954–8983

100 %

136

Riemerella phage RAP44

27500–27529

90 %

138

Riemerella phage RAP44

15935–15964

100 %

145

Riemerella phage RAP44

13831–13860

100 %

148

Azospirillum brasilense strain Az39 plasmid AbAZ39_p4/Azospirillum brasilense Sp245 plasmid AZOBR_p4

213466–213495/224417–224446

87 %/87 %

155

Riemerella phage RAP44

24539–24568

100 %

180

Riemerella phage RAP44

28468–28497

97 %

188

Riemerella phage RAP44

1300–1329

100 %

189

Riemerella phage RAP44

2509–2538

97 %

195

Pantoea sp. At-9b plasmid pPAT9B01

317614–317642

93 %

238

Riemerella phage RAP44

32595–32623

97 %

  1. The superscript “1” represents CRISPR1, and “2” represents CRISPR2. The spacer number is corresponding to that in Figs. 5 and 6