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Table 1 Identification of phage/plasmid protospacers

From: Comparative genomic analysis identifies structural features of CRISPR-Cas systems in Riemerella anatipestifer

Spacer Number Description of protospacer Position of protospacer Similarity
16 Enterobacteria phage phi92 146275-146304 87 %
116 Riemerella phage RAP44 42519–42548 100 %
120 Riemerella phage RAP44/Deferribacter desulfuricans SSM1 plasmid megaplasmid pDF308 DNA 42842–42871/80620–80649 87 %/87 %
134 Riemerella phage RAP44 8954–8983 100 %
136 Riemerella phage RAP44 27500–27529 90 %
138 Riemerella phage RAP44 15935–15964 100 %
145 Riemerella phage RAP44 13831–13860 100 %
148 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4/Azospirillum brasilense Sp245 plasmid AZOBR_p4 213466–213495/224417–224446 87 %/87 %
155 Riemerella phage RAP44 24539–24568 100 %
180 Riemerella phage RAP44 28468–28497 97 %
188 Riemerella phage RAP44 1300–1329 100 %
189 Riemerella phage RAP44 2509–2538 97 %
195 Pantoea sp. At-9b plasmid pPAT9B01 317614–317642 93 %
238 Riemerella phage RAP44 32595–32623 97 %
  1. The superscript “1” represents CRISPR1, and “2” represents CRISPR2. The spacer number is corresponding to that in Figs. 5 and 6