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Table 3 Ten SNPs with the highest allele frequency variation between the Tropical and Temperate groups

From: Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

SNP name Chra Position Allele Allele frequency Allele frequency variation
Temb Troc
PZE-103086995 3 144096829 A 0.888 0.118 0.770
SYN23575 2 49925995 G 0.855 0.094 0.761
PZE-103087179 3 144683803 A 0.066 0.795 0.729
PZE-103087189 3 144684150 C 0.066 0.795 0.729
SYN14294 2 152502748 A 0.178 0.906 0.728
PZE-103087178 3 144683738 C 0.908 0.181 0.727
SYN20183 3 144689036 G 0.914 0.197 0.717
PZE-103087199 3 144687159 C 0.066 0.780 0.714
SYN20185 3 144689964 G 0.066 0.780 0.714
SYN20186 3 144687048 C 0.066 0.780 0.714
  1. aChr, Chromosome; bTem, Temperate group; cTro, Tropical group
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BMC Genomics

ISSN: 1471-2164

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