Table 2 Comparison of LTR retrotransposon annotations between chicken genome assemblies
From: A new look at the LTR retrotransposon content of the chicken genome
| Â | galGal3 | galGal4 (RepeatMasker) | galGal4 (LocaTR) |
|---|---|---|---|
Assembly length (bp) | 1,098,770,941 | 1,046,932,099 | 1,046,932,099 |
Scaffold N50 (bp) | 11,063,745 | 12,877,381 | 12,877,381 |
Contig N50 (bp) | 46,345 | 279,750 | 279,750 |
LTR content (bp) | 14,870,595 | 17,369,358 | 31,490,117 |
LTR content (%) | 1.35 | 1.66 | 3.01 |
Number of SIEs | 492 | - | 1,073 |