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Table 2 Comparison of LTR retrotransposon annotations between chicken genome assemblies

From: A new look at the LTR retrotransposon content of the chicken genome

  galGal3 galGal4 (RepeatMasker) galGal4 (LocaTR)
Assembly length (bp) 1,098,770,941 1,046,932,099 1,046,932,099
Scaffold N50 (bp) 11,063,745 12,877,381 12,877,381
Contig N50 (bp) 46,345 279,750 279,750
LTR content (bp) 14,870,595 17,369,358 31,490,117
LTR content (%) 1.35 1.66 3.01
Number of SIEs 492 - 1,073