Fig. 5
From: An analytical workflow for accurate variant discovery in highly divergent regions
Overlap of known variants in the HLA region of the CLL sample 612703. a Overlap of known SNPs. b Overlap of known INDELs. The 12 call sets were generated by three callers together with four mappers. Number of known variants is shown in parentheses. Each non-triangle box is pseudo-colored to signify the proportion of the call set on the left that is overlapped by the call set showed on the top. HC GATK HaplotypeCaller; PY Platypus; UG GATK UnifiedGenotyper