From: An analytical workflow for accurate variant discovery in highly divergent regions
Type | Rep | Public call set | No. SNP | |||
---|---|---|---|---|---|---|
Cortex | DISCOVAR | GATK HC | Conf | |||
Known | 1 only | 6 | 13 | 17 | 2 | 21 (11,0) |
Known | 2 only | 3 | 5 | 11 | 4 | 11 (3,2) |
Known | 1 & 2 | 4 | 18 | 48 | 6 | 57 (33,10) |
Novel | 1 & 2 | 1 | 10 | 4 | 0 | 13 (2,5) |