TY - JOUR AU - Lavrov, D. V. PY - 2007 DA - 2007// TI - Key transitions in animal evolution: a mitochondrial DNA perspective JO - Integr Comp Biol VL - 47 UR - https://doi.org/10.1093/icb/icm045 DO - 10.1093/icb/icm045 ID - Lavrov2007 ER - TY - JOUR AU - Taylor, R. W. AU - Turnbull, D. M. PY - 2005 DA - 2005// TI - Mitochondrial DNA mutations in human disease JO - Nat Rev Genet VL - 6 UR - https://doi.org/10.1038/nrg1606 DO - 10.1038/nrg1606 ID - Taylor2005 ER - TY - JOUR AU - Robberson, D. AU - Vinograd, J. AU - Kasamatsu, H. PY - 1972 DA - 1972// TI - Replication of mitochondrial DNA. Circular replicative intermediates in mouse L cells JO - Proc Natl Acad Sci U S A VL - 69 UR - https://doi.org/10.1073/pnas.69.3.737 DO - 10.1073/pnas.69.3.737 ID - Robberson1972 ER - TY - JOUR AU - Holt, I. J. AU - Lorimer, H. E. AU - Jacobs, H. T. PY - 2000 DA - 2000// TI - Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA JO - Cell VL - 100 UR - https://doi.org/10.1016/S0092-8674(00)80688-1 DO - 10.1016/S0092-8674(00)80688-1 ID - Holt2000 ER - TY - JOUR AU - Holt, I. J. AU - Jacobs, H. T. PY - 2014 DA - 2014// TI - Unique features of DNA replication in mitochondria: a functional and evolutionary perspective JO - Bioessays VL - 36 UR - https://doi.org/10.1002/bies.201400052 DO - 10.1002/bies.201400052 ID - Holt2014 ER - TY - STD TI - Lewis SC, Joers P, Willcox S, Griffith JD, Jacobs HT, Hyman BC. A rolling circle replication mechanism produces multimeric lariats of mitochondrial DNA in Caenorhabditis elegans. PLoS Genet. 2015;11. doi:10.1371/journal.pgen.1004985. ID - ref6 ER - TY - JOUR AU - Kayal, E. AU - Bentlage, B. AU - Collins, A. G. AU - Kayal, M. AU - Pirro, S. AU - Lavrov, D. V. PY - 2012 DA - 2012// TI - Evolution of linear mitochondrial genomes in Medusozoan Cnidarians JO - Genome Biol Evol VL - 4 UR - https://doi.org/10.1093/gbe/evr123 DO - 10.1093/gbe/evr123 ID - Kayal2012 ER - TY - JOUR AU - Doublet, V. AU - Helleu, Q. AU - Raimond, R. AU - Souty-Grosset, C. AU - Marcade, I. PY - 2013 DA - 2013// TI - Inverted repeats and genome architecture conversions of Terrestrial isopods mitochondrial DNA JO - J Mol Evol VL - 77 UR - https://doi.org/10.1007/s00239-013-9587-7 DO - 10.1007/s00239-013-9587-7 ID - Doublet2013 ER - TY - JOUR AU - Shao, R. F. AU - Barker, S. C. AU - Li, H. AU - Song, S. AU - Poudel, S. AU - Su, Y. PY - 2015 DA - 2015// TI - Fragmented mitochondrial genomes in two suborders of parasitic lice of eutherian mammals (Anoplura and Rhynchophthirina, Insecta) JO - Sci Rep ID - Shao2015 ER - TY - JOUR AU - Dickey, A. M. AU - Kumar, V. AU - Morgan, J. K. AU - Jara-Cavieres, A. AU - Shatters, R. G. AU - McKenzie, C. L. AU - Osborne, L. S. PY - 2015 DA - 2015// TI - A novel mitochondrial genome architecture in thrips (Insecta: Thysanoptera): extreme size asymmetry among chromosomes and possible recent control region duplication JO - BMC Genomics ID - Dickey2015 ER - TY - JOUR AU - Suga, K. AU - Welch, D. B. M. AU - Tanaka, Y. AU - Sakakura, Y. AU - Hagiwarak, A. PY - 2008 DA - 2008// TI - Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn058 DO - 10.1093/molbev/msn058 ID - Suga2008 ER - TY - JOUR AU - Wei, D. D. AU - Shao, R. F. AU - Yuan, M. L. AU - Dou, W. AU - Barker, S. C. AU - Wang, J. J. PY - 2012 DA - 2012// TI - The multipartite mitochondrial genome of Liposcelis bostrychophila: Insights into the evolution of mitochondrial genomes in bilateral animals JO - PLoS One ID - Wei2012 ER - TY - STD TI - Hunt VL, Tsai IJ, Coghlan A, Reid AJ, Holroyd N, Foth BJ, Tracey A, Cotton JA, Stanley EJ, Beasley H, et al. The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics in press. 2016. doi:10.1038/ng.3495. ID - ref13 ER - TY - JOUR AU - Shao, R. F. AU - Kirness, E. F. AU - Barker, S. C. PY - 2009 DA - 2009// TI - The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus JO - Genome Res VL - 19 UR - https://doi.org/10.1101/gr.083188.108 DO - 10.1101/gr.083188.108 ID - Shao2009 ER - TY - JOUR AU - Cameron, S. L. AU - Yoshizawa, K. AU - Mizukoshi, A. AU - Whiting, M. F. AU - Johnson, K. P. PY - 2011 DA - 2011// TI - Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera) JO - BMC Genomics ID - Cameron2011 ER - TY - JOUR AU - Dong, W. G. AU - Song, S. AU - Guo, X. G. AU - Jin, D. C. AU - Yang, Q. Q. AU - Barker, S. C. AU - Shao, R. F. PY - 2014 DA - 2014// TI - Fragmented mitochondrial genomes are present in both major clades of the blood-sucking lice (suborder Anoplura): evidence from two Hoplopleura rodent lice (family Hoplopleuridae) JO - BMC Genomics ID - Dong2014 ER - TY - JOUR AU - Dong, W. G. AU - Song, S. M. AU - Jin, D. C. AU - Guo, X. G. AU - Shao, R. PY - 2014 DA - 2014// TI - Fragmented mitochondrial genomes of the rat lice, Polyplax asiatica and Polyplax spinulosa: intra-genus variation in fragmentation pattern and a possible link between the extent of fragmentation and the length of life cycle JO - BMC Genomics ID - Dong2014 ER - TY - STD TI - Song SD, Barker SC, Shao RF. Variation in mitochondrial minichromosome composition between blood-sucking lice of the genus Haematopinus that infest horses and pigs. Parasit Vectors. 2014;7. doi:10.1186/1756-3305-7-144. ID - ref18 ER - TY - JOUR AU - Armstrong, M. R. AU - Blok, V. C. AU - Phillips, M. S. PY - 2000 DA - 2000// TI - A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida JO - Genetics VL - 154 ID - Armstrong2000 ER - TY - JOUR AU - Gibson, T. AU - Blok, V. C. AU - Dowton, M. PY - 2007 DA - 2007// TI - Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved among close nematode relatives JO - J Mol Evol VL - 65 UR - https://doi.org/10.1007/s00239-007-9007-y DO - 10.1007/s00239-007-9007-y ID - Gibson2007 ER - TY - JOUR AU - Handoo, Z. A. AU - Carta, L. K. AU - Skantar, A. M. AU - Chitwood, D. J. PY - 2012 DA - 2012// TI - Description of Globodera ellingtonae n. sp (Nematoda: Heteroderidae) from Oregon JO - J Nematol VL - 44 ID - Handoo2012 ER - TY - JOUR AU - Zasada, I. A. AU - Phillips, W. S. AU - Ingham, R. E. PY - 2015 DA - 2015// TI - Biological insights into Globodera ellingtonae JO - Asp Appl Biol VL - 130 ID - Zasada2015 ER - TY - JOUR AU - Hodda, M. AU - Cook, D. C. PY - 2009 DA - 2009// TI - Economic impact from unrestricted spread of potato cyst nematodes in Australia JO - Phytopathology VL - 99 UR - https://doi.org/10.1094/PHYTO-99-12-1387 DO - 10.1094/PHYTO-99-12-1387 ID - Hodda2009 ER - TY - JOUR AU - Zasada, I. A. AU - Peetz, A. AU - Wade, N. AU - Navarre, R. A. AU - Ingham, R. E. PY - 2013 DA - 2013// TI - Host status of different potato (Solanum tuberosum) varieties and hatching in root diffusates of Globodera ellingtonae JO - J Nematol VL - 45 ID - Zasada2013 ER - TY - JOUR AU - Phillips, W. S. AU - Keirnan, S. R. AU - Zasada, I. A. PY - 2015 DA - 2015// TI - The relationship between temperature and development in Globodera ellingtonae JO - J Nematol VL - 47 ID - Phillips2015 ER - TY - JOUR AU - Taanman, J. W. PY - 1999 DA - 1999// TI - The mitochondrial genome: structure, transcription, translation and replication JO - Biochim Biophys Acta VL - 1410 UR - https://doi.org/10.1016/S0005-2728(98)00161-3 DO - 10.1016/S0005-2728(98)00161-3 ID - Taanman1999 ER - TY - JOUR AU - Jacob, J. AU - Mitreva, M. AU - Vanholme, B. AU - Gheysen, G. PY - 2008 DA - 2008// TI - Exploring the transcriptome of the burrowing nematode Radopholus similis JO - Mol Gen Genomics VL - 280 UR - https://doi.org/10.1007/s00438-008-0340-7 DO - 10.1007/s00438-008-0340-7 ID - Jacob2008 ER - TY - JOUR AU - Sultana, T. AU - Kim, J. AU - Lee, S. H. AU - Han, H. AU - Kim, S. AU - Min, G. S. AU - Nadler, S. A. AU - Park, J. K. PY - 2013 DA - 2013// TI - Comparative analysis of complete mitochondrial genome sequences confirms independent origins of plant-parasitic nematodes JO - BMC Evol Biol ID - Sultana2013 ER - TY - JOUR AU - Humphreys-Pereira, D. A. AU - Elling, A. A. PY - 2014 DA - 2014// TI - Mitochondrial genomes of Meloidogyne chitwoodi and M. incognita (Nematoda: Tylenchina): comparative analysis, gene order, and phylogenetic relationships with other nematodes JO - Mol Biochem Parasitol VL - 194 UR - https://doi.org/10.1016/j.molbiopara.2014.04.003 DO - 10.1016/j.molbiopara.2014.04.003 ID - Humphreys-Pereira2014 ER - TY - JOUR AU - Humphreys-Pereira, D. A. AU - Elling, A. A. PY - 2015 DA - 2015// TI - Mitochondrial genome plasticity among species of the nematode genus Meloidogyne (Nematoda: Tylenchina) JO - Gene VL - 560 UR - https://doi.org/10.1016/j.gene.2015.01.065 DO - 10.1016/j.gene.2015.01.065 ID - Humphreys-Pereira2015 ER - TY - JOUR AU - Gibson, T. AU - Farrugia, D. AU - Barrett, J. AU - Chitwood, D. J. AU - Rowe, J. AU - Subbotin, S. AU - Dowton, M. PY - 2011 DA - 2011// TI - The mitochondrial genome of the soybean cyst nematode, Heterodera glycines JO - Genome VL - 54 UR - https://doi.org/10.1139/g11-024 DO - 10.1139/g11-024 ID - Gibson2011 ER - TY - JOUR AU - Ojala, D. AU - Montoya, J. AU - Attardi, G. PY - 1981 DA - 1981// TI - Transfer-RNA punctuation model of RNA processing in human mitochondria JO - Nature VL - 290 UR - https://doi.org/10.1038/290470a0 DO - 10.1038/290470a0 ID - Ojala1981 ER - TY - JOUR AU - Rand, D. M. PY - 2009 DA - 2009// TI - ‘Why genomes in pieces?’ revisited: sucking lice do their own thing in mtDNA circle game JO - Genome Res VL - 19 UR - https://doi.org/10.1101/gr.091132.109 DO - 10.1101/gr.091132.109 ID - Rand2009 ER - TY - JOUR AU - Hwang, D. S. AU - Suga, K. AU - Sakakura, Y. AU - Park, H. G. AU - Hagiwara, A. AU - Rhee, J. S. AU - Lee, J. S. PY - 2014 DA - 2014// TI - Comp lete mitochondrial genome of the monogonont rotifer, Brachionus koreanus (Rotifera, Brachionidae) JO - Mitochondrial DNA VL - 25 UR - https://doi.org/10.3109/19401736.2013.775274 DO - 10.3109/19401736.2013.775274 ID - Hwang2014 ER - TY - JOUR AU - Chen, S. C. AU - Wei, D. D. AU - Shao, R. F. AU - Shi, J. X. AU - Dou, W. AU - Wang, J. J. PY - 2014 DA - 2014// TI - Evolution of multipartite mi tochondrial genomes in the booklice of the genus Liposcelis (Psocoptera) JO - BMC Genomics ID - Chen2014 ER - TY - JOUR AU - Phillips, W. S. AU - Coleman-Hulbert, A. L. AU - Weiss, E. S. AU - Howe, D. K. AU - Ping, S. AU - Wernick, R. I. AU - Estes, S. AU - Denver, D. R. PY - 2015 DA - 2015// TI - Selfish mitochondrial DNA proliferates and diversifies in small, but not large, experimental populations of Caenorhabditis briggsae JO - Genome Biol Evol VL - 7 UR - https://doi.org/10.1093/gbe/evv116 DO - 10.1093/gbe/evv116 ID - Phillips2015 ER - TY - JOUR AU - Bratic, I. AU - Hench, J. AU - Henriksson, J. AU - Antebi, A. AU - Burglin, T. R. AU - Trifunovic, A. PY - 2009 DA - 2009// TI - Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp018 DO - 10.1093/nar/gkp018 ID - Bratic2009 ER - TY - JOUR AU - Bernt, M. AU - Braband, A. AU - Schierwater, B. AU - Stadler, P. F. PY - 2013 DA - 2013// TI - Genetic aspects of mitochondrial genome evolution JO - Mol Phylogenet Evol VL - 69 UR - https://doi.org/10.1016/j.ympev.2012.10.020 DO - 10.1016/j.ympev.2012.10.020 ID - Bernt2013 ER - TY - JOUR AU - Kellis, M. AU - Birren, B. W. AU - Lander, E. S. PY - 2004 DA - 2004// TI - Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae JO - Nature VL - 428 UR - https://doi.org/10.1038/nature02424 DO - 10.1038/nature02424 ID - Kellis2004 ER - TY - JOUR AU - Kumazawa, Y. AU - Ota, H. AU - Nishida, M. AU - Ozawa, T. PY - 1996 DA - 1996// TI - Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025690 DO - 10.1093/oxfordjournals.molbev.a025690 ID - Kumazawa1996 ER - TY - JOUR AU - Gilkerson, R. W. AU - Schon, E. A. AU - Hernandez, E. AU - Davidson, M. M. PY - 2008 DA - 2008// TI - Mitochondrial nucleoids maintain genetic autonomy but allow for functional complementation JO - J Cell Biol VL - 181 UR - https://doi.org/10.1083/jcb.200712101 DO - 10.1083/jcb.200712101 ID - Gilkerson2008 ER - TY - JOUR AU - Kukat, C. AU - Wurm, C. A. AU - Spahr, H. AU - Falkenberg, M. AU - Larsson, N. -. G. AU - Jakobs, S. PY - 2011 DA - 2011// TI - Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA JO - Proc Natl Acad Sci U S A VL - 108 UR - https://doi.org/10.1073/pnas.1109263108 DO - 10.1073/pnas.1109263108 ID - Kukat2011 ER - TY - JOUR AU - D’Aurelio, M. AU - Gajewski, C. D. AU - Lin, M. T. AU - Mauck, W. M. AU - Shao, L. Z. AU - Lenaz, G. AU - Moraes, C. T. AU - Manfredi, G. PY - 2004 DA - 2004// TI - Heterologous mitochondrial DNA recombination in human cells JO - Hum Mol Genet VL - 13 UR - https://doi.org/10.1093/hmg/ddh326 DO - 10.1093/hmg/ddh326 ID - D’Aurelio2004 ER - TY - JOUR AU - Bernt, M. AU - Donath, A. AU - Juhling, F. AU - Externbrink, F. AU - Florentz, C. AU - Fritzsch, G. AU - Putz, J. AU - Middendorf, M. AU - Stadler, P. F. PY - 2013 DA - 2013// TI - MITOS: improved de novo metazoan mitochondrial genome annotation JO - Mol Phylogenet Evol VL - 69 UR - https://doi.org/10.1016/j.ympev.2012.08.023 DO - 10.1016/j.ympev.2012.08.023 ID - Bernt2013 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Laslett, D. AU - Canback, B. PY - 2008 DA - 2008// TI - ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm573 DO - 10.1093/bioinformatics/btm573 ID - Laslett2008 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucleic Acids Symp Ser VL - 41 ID - Hall1999 ER - TY - BOOK PY - 2014 DA - 2014// TI - R: a language and environment for statistical computing PB - R Foundation for Statistical Computing CY - Vienna ID - ref48 ER - TY - JOUR AU - Langmead, B. AU - Salzberg, S. PY - 2012 DA - 2012// TI - Fast gapped-read alignment with Bowtie 2 JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.1923 DO - 10.1038/nmeth.1923 ID - Langmead2012 ER - TY - JOUR AU - Zasada, I. A. AU - Peetz, A. AU - Howe, D. K. AU - Wilhelm, L. J. AU - Cheam, D. AU - Denver, D. R. AU - Smythe, A. B. PY - 2014 DA - 2014// TI - Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex JO - PLoS One ID - Zasada2014 ER -