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Fig. 1 | BMC Genomics

Fig. 1

From: Low genetic diversity among historical and contemporary clinical isolates of felid herpesvirus 1

Fig. 1

Nucleotide sequence alignment and phylogenetic tree of the complete genomes of 27 FHV-1 isolates, excluding the terminal repeat region. a Alignment of the complete genome sequences of FHV-1 isolates performed using MAFFT. The Feligen vaccine F2 isolate was used as the reference sequence. Vertical black lines indicate SNPs relative to the reference and dashes indicate sequence gaps. b Phylogenetic tree generated from the complete genome alignment, using the Jukes Cantor model and the neighbor-joining method. One thousand bootstrap replicates were used to assess the significance of the tree topology. The bar indicates nucleotide substitutions per site. The origin of isolates is indicated to the right of the isolate name

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