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Table 4 Gene ontology (GO) term enrichment for the abundant proteins of the proteomes of rhizobial strains

From: Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Strain GO ID

GO term

Annotated orthologous groups (OGs)

Annotated OGs in this list

Expected annotated OGs by random

P-value

CCGM1

Biological processes

    

 GO:0046395

Carboxylic acid catabolic process

425

12

0.4

3.60E-15

 GO:0009063

Cellular amino acid catabolic process

221

10

0.21

8.50E-15

 GO:0046365

Monosaccharide catabolic process

189

9

0.18

1.30E-13

 GO:0051188

Cofactor biosynthetic process

624

12

0.59

3.30E-13

 GO:0006732

Coenzyme metabolic process

710

12

0.67

1.50E-12

 

Molecular function

    

 GO:0048037

Cofactor binding

993

12

0.88

3.50E-11

 GO:0051287

NAD binding

69

5

0.06

4.40E-09

 GO:0050662

Coenzyme binding

665

9

0.59

5.30E-09

 GO:0016740

Transferase activity

7189

21

6.35

8.20E-08

 GO:0016491

Oxidoreductase activity

3415

15

3.01

8.60E-08

CIAT652

Biological processes

    

 GO:0005996

Monosaccharide metabolic process

404

9

0.31

1.70E-11

 GO:0046394

Carboxylic acid biosynthetic process

1074

11

0.83

2.70E-10

 GO:0006790

Sulfur compound metabolic process

583

9

0.45

4.30E-10

 GO:0044275

Cellular carbohydrate catabolic process

156

6

0.12

2.20E-09

 GO:0009117

Nucleotide metabolic process

1446

11

1.12

5.90E-09

 

Molecular function

    

 GO:0016787

Hydrolase activity

7866

21

5.7

3.00E-09

 GO:0016462

Pyrophosphatase activity

1346

9

0.97

3.30E-07

 GO:0042626

ATPase activity, coupled to transmembrane movement of substances

392

6

0.28

3.50E-07

 GO:0016835

Carbon-oxygen lyase activity

411

6

0.3

4.60E-07

 GO:0004022

Alcohol dehydrogenase (NAD) activity

23

3

0.02

6.10E-07

 GO:0004812

Aminoacyl-tRNA ligase activity

106

4

0.08

1.10E-06

CCGM7

Biological processes

    

 GO:0046483

Heterocycle metabolic process

2459

17

1.72

3.50E-14

 GO:0009117

Nucleotide metabolic process

1446

12

1.01

9.40E-11

 GO:0015980

Energy derivation by oxidation of organic compounds

652

9

0.46

4.30E-10

 GO:0010035

Response to inorganic substance

944

10

0.66

4.90E-10

 GO:0006950

Response to stress

5245

18

3.67

5.80E-10

 GO:0046686

Response to cadmium ion

271

7

0.19

6.60E-10

 

Molecular function

    

 GO:0008266

Poly(U) RNA binding

22

4

0.01

1.10E-09

 GO:0008187

Poly-pyrimidine tract binding

29

4

0.02

3.50E-09

 GO:0046872

Metal ion binding

5534

16

3.63

4.80E-08

 GO:0043169

Cation binding

5559

16

3.65

5.20E-08

 GO:0003727

Single-stranded RNA binding

67

4

0.04

1.10E-07

 GO:0017076

Purine nucleotide binding

1824

10

1.2

1.40E-07

CFNEI73

Biological processes

    

 GO:0044283

Small molecule biosynthetic process

1489

13

1.04

6.30E-12

 GO:0016054

Organic acid catabolic process

425

9

0.3

9.70E-12

 GO:0008652

Cellular amino acid biosynthetic process

491

9

0.34

3.50E-11

 GO:0009081

Branched-chain amino acid metabolic process

55

5

0.04

4.00E-10

 GO:0043648

Dicarboxylic acid metabolic process

148

6

0.1

8.30E-10

 

Molecular function

    

 GO:0050662

Coenzyme binding

665

8

0.45

1.10E-08

 GO:0050660

Flavin adenine dinucleotide binding

153

5

0.1

6.20E-08

 GO:0016462

Pyrophosphatase activity

1346

9

0.91

1.80E-07

 GO:0048037

Cofactor binding

993

8

0.67

2.40E-07

 GO:0016817

Hydrolase activity, acting on acid anhydrides

1456

9

0.99

3.40E-07

 GO:0051287

NAD binding

69

3

0.05

1.40E-05

  1. Only exclusive terms for each strain are shown