Skip to main content

Table 4 Gene ontology (GO) term enrichment for the abundant proteins of the proteomes of rhizobial strains

From: Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Strain GO ID GO term Annotated orthologous groups (OGs) Annotated OGs in this list Expected annotated OGs by random P-value
CCGM1 Biological processes     
 GO:0046395 Carboxylic acid catabolic process 425 12 0.4 3.60E-15
 GO:0009063 Cellular amino acid catabolic process 221 10 0.21 8.50E-15
 GO:0046365 Monosaccharide catabolic process 189 9 0.18 1.30E-13
 GO:0051188 Cofactor biosynthetic process 624 12 0.59 3.30E-13
 GO:0006732 Coenzyme metabolic process 710 12 0.67 1.50E-12
  Molecular function     
 GO:0048037 Cofactor binding 993 12 0.88 3.50E-11
 GO:0051287 NAD binding 69 5 0.06 4.40E-09
 GO:0050662 Coenzyme binding 665 9 0.59 5.30E-09
 GO:0016740 Transferase activity 7189 21 6.35 8.20E-08
 GO:0016491 Oxidoreductase activity 3415 15 3.01 8.60E-08
CIAT652 Biological processes     
 GO:0005996 Monosaccharide metabolic process 404 9 0.31 1.70E-11
 GO:0046394 Carboxylic acid biosynthetic process 1074 11 0.83 2.70E-10
 GO:0006790 Sulfur compound metabolic process 583 9 0.45 4.30E-10
 GO:0044275 Cellular carbohydrate catabolic process 156 6 0.12 2.20E-09
 GO:0009117 Nucleotide metabolic process 1446 11 1.12 5.90E-09
  Molecular function     
 GO:0016787 Hydrolase activity 7866 21 5.7 3.00E-09
 GO:0016462 Pyrophosphatase activity 1346 9 0.97 3.30E-07
 GO:0042626 ATPase activity, coupled to transmembrane movement of substances 392 6 0.28 3.50E-07
 GO:0016835 Carbon-oxygen lyase activity 411 6 0.3 4.60E-07
 GO:0004022 Alcohol dehydrogenase (NAD) activity 23 3 0.02 6.10E-07
 GO:0004812 Aminoacyl-tRNA ligase activity 106 4 0.08 1.10E-06
CCGM7 Biological processes     
 GO:0046483 Heterocycle metabolic process 2459 17 1.72 3.50E-14
 GO:0009117 Nucleotide metabolic process 1446 12 1.01 9.40E-11
 GO:0015980 Energy derivation by oxidation of organic compounds 652 9 0.46 4.30E-10
 GO:0010035 Response to inorganic substance 944 10 0.66 4.90E-10
 GO:0006950 Response to stress 5245 18 3.67 5.80E-10
 GO:0046686 Response to cadmium ion 271 7 0.19 6.60E-10
  Molecular function     
 GO:0008266 Poly(U) RNA binding 22 4 0.01 1.10E-09
 GO:0008187 Poly-pyrimidine tract binding 29 4 0.02 3.50E-09
 GO:0046872 Metal ion binding 5534 16 3.63 4.80E-08
 GO:0043169 Cation binding 5559 16 3.65 5.20E-08
 GO:0003727 Single-stranded RNA binding 67 4 0.04 1.10E-07
 GO:0017076 Purine nucleotide binding 1824 10 1.2 1.40E-07
CFNEI73 Biological processes     
 GO:0044283 Small molecule biosynthetic process 1489 13 1.04 6.30E-12
 GO:0016054 Organic acid catabolic process 425 9 0.3 9.70E-12
 GO:0008652 Cellular amino acid biosynthetic process 491 9 0.34 3.50E-11
 GO:0009081 Branched-chain amino acid metabolic process 55 5 0.04 4.00E-10
 GO:0043648 Dicarboxylic acid metabolic process 148 6 0.1 8.30E-10
  Molecular function     
 GO:0050662 Coenzyme binding 665 8 0.45 1.10E-08
 GO:0050660 Flavin adenine dinucleotide binding 153 5 0.1 6.20E-08
 GO:0016462 Pyrophosphatase activity 1346 9 0.91 1.80E-07
 GO:0048037 Cofactor binding 993 8 0.67 2.40E-07
 GO:0016817 Hydrolase activity, acting on acid anhydrides 1456 9 0.99 3.40E-07
 GO:0051287 NAD binding 69 3 0.05 1.40E-05
  1. Only exclusive terms for each strain are shown