Skip to main content

Advertisement

Table 2 Summary of assembly statistics from the nine molluscan transcriptomic libraries

From: Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks

Assembler Organism No. of transcripts No. of transcripts > 1,000 bp No. of reconstructed bases (bp) No. of reconstructed bases in transcripts >1,000 bp Length of the largest transcript reconstructed (bp) N50
IDBA-tran Gymnomenia pellucida (Neomeniomorpha) 228,678 136,889 408,484,174 355,797,467 26,833 2,616
Wirenia argentea (Neomeniomorpha) 394,251 178,721 495,209,150 369,131,155 13,881 1,725
Scutopus ventrolineatus (Chaetodermomorpha) 220,258 96,068 253,037,497 181,977,467 17,067 1,555
Acanthochitona crinita (Polyplacophora) 364,800 234,607 689,247,497 614,059,419 17,023 2,737
Idiosepius notoides (Cephalopoda) 285,863 93,114 297,178,066 189,330,826 19,705 1,399
Nucula tumidula (Bivalvia) 273,272 126,403 378,309,195 296,427,272 20,605 2,100
Antalis entalis (Scaphopoda) 351,943 125,869 369,111,329 241,658,022 28,825 1,399
MIRA4 Idiosepius notoides (Cephalopoda) 43,218 6,880 29,267,478 10,095,956 10,063 785
Lottia cf. kogamogai (Gastropoda) 34,794 6,391 25,737,707 9,530,625 7,134 817