Table 2 Summary of assembly statistics from the nine molluscan transcriptomic libraries
From: Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks
Assembler | Organism | No. of transcripts | No. of transcripts > 1,000 bp | No. of reconstructed bases (bp) | No. of reconstructed bases in transcripts >1,000 bp | Length of the largest transcript reconstructed (bp) | N50 |
|---|---|---|---|---|---|---|---|
IDBA-tran | Gymnomenia pellucida (Neomeniomorpha) | 228,678 | 136,889 | 408,484,174 | 355,797,467 | 26,833 | 2,616 |
Wirenia argentea (Neomeniomorpha) | 394,251 | 178,721 | 495,209,150 | 369,131,155 | 13,881 | 1,725 | |
Scutopus ventrolineatus (Chaetodermomorpha) | 220,258 | 96,068 | 253,037,497 | 181,977,467 | 17,067 | 1,555 | |
Acanthochitona crinita (Polyplacophora) | 364,800 | 234,607 | 689,247,497 | 614,059,419 | 17,023 | 2,737 | |
Idiosepius notoides (Cephalopoda) | 285,863 | 93,114 | 297,178,066 | 189,330,826 | 19,705 | 1,399 | |
Nucula tumidula (Bivalvia) | 273,272 | 126,403 | 378,309,195 | 296,427,272 | 20,605 | 2,100 | |
Antalis entalis (Scaphopoda) | 351,943 | 125,869 | 369,111,329 | 241,658,022 | 28,825 | 1,399 | |
MIRA4 | Idiosepius notoides (Cephalopoda) | 43,218 | 6,880 | 29,267,478 | 10,095,956 | 10,063 | 785 |
Lottia cf. kogamogai (Gastropoda) | 34,794 | 6,391 | 25,737,707 | 9,530,625 | 7,134 | 817 |