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Table 5 Summary of initial pre-processing and generation of the high-quality molluscan protein gene sets

From: Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks

Organism No. of raw readsa No. of reconstructed transcripts No. of n-rb putative proteins Gene set completeness (%)
Gymnomenia pellucida (Neomeniomorpha) 53,751,440 228,678 54,997 94.31
Wirenia argentea (Neomeniomorpha) 50,456,889 394,251 54,183 81.14
Scutopus ventrolineatus (Chaetodermomorpha) 43,492,046 220,258 39,631 79.83
Acanthochitona crinita (Polyplacophora) 35,737,364 364,800 59,271 94.42
Idiosepius notoides (Cephalopoda) 38,267,214 285,863 21,533c 92.76c
Idiosepius notoides (454) (Cephalopoda) 588,878 43,218
Lottia cf. kogamogai (Gastropoda) 402,814 34,794 16,781 68.21
Nucula tumidula (Bivalvia) 40,797,848 273,272 38,563 95.02
Antalis entalis (Scaphopoda) 24,194,021 351,943 35,443 94.54
  1. aRead pairs for Illumina libraries
  2. bNon-redundant
  3. cAfter the assembly step the Idiosepius notoides libraries were combined together for the subsequent downstream analysis