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Table 4 The power comparison of SKAT, SKAT-O, and AP-SKAT aimed at testing the association between randomly selected 5 kb regions and continuous traits under the effect size = 1.6

From: AP-SKAT: highly-efficient genome-wide rare variant association test

SKAT

SKAT-O

AP-SKAT

 

10−2

10−3

10−4

10−2

10−3

10−4

10−2

10−3

10−4

250

2.19E-1

8.09E-2

2.90E-2

2.21E-1

8.30E-2

2.95E-2

2.24E-1

8.32E-2

2.97E-2

500

4.84E-1

3.05E-1

1.63E-1

4.80E-1

3.04E-1

1.64E-1

4.85E-1

3.01E-1

1.67E-1

750

5.99E-1

4.83E-1

3.69E-1

5.99E-1

4.82E-1

3.71E-1

6.09E-1

4.80E-1

3.66E-1

1000

7.42E-1

5.42E-1

4.88E-1

7.41E-1

5.42E-1

4.89E-1

7.48E-1

5.46E-1

4.87E-1

1250

8.50E-1

6.52E-1

5.14E-1

8.50E-1

6.54E-1

5.13E-1

8.50E-1

6.54E-1

5.16E-1

1500

9.19E-1

7.50E-1

5.93E-1

9.20E-1

7.48E-1

5.90E-1

9.18E-1

7.48E-1

5.94E-1