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Table 5 The power comparison of SKAT, SKAT-O, and AP-SKAT aimed at testing the association between randomly selected 5 kb regions and continuous traits under the effect size = 2.0

From: AP-SKAT: highly-efficient genome-wide rare variant association test

SKAT

SKAT-O

AP-SKAT

 

10−2

10−3

10−4

10−2

10−3

10−4

10−2

10−3

10−4

250

3.77E-1

2.00E-1

8.70E-2

3.82E-1

2.01E-1

8.84E-2

3.83E-1

1.97E-1

8.88E-2

500

6.14E-1

4.89E-1

3.88E-1

6.14E-1

4.90E-1

3.88E-1

6.24E-1

4.89E-1

3.79E-1

750

8.16E-1

6.12E-1

5.01E-1

8.16E-1

6.07E-1

5.01E-1

8.16E-1

6.14E-1

5.02E-1

1000

9.30E-1

7.68E-1

6.10E-1

9.30E-1

7.66E-1

6.11E-1

9.27E-1

7.69E-1

6.12E-1

1250

9.81E-1

8.96E-1

7.48E-1

9.80E-1

8.94E-1

7.42E-1

9.78E-1

8.78E-1

7.42E-1

1500

9.95E-1

9.61E-1

8.58E-1

9.95E-1

9.60E-1

8.59E-1

9.94E-1

9.48E-1

8.49E-1