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Table 2 Summary of sequencing and assembly statistics

From: Metatranscriptome analysis reveals bacterial symbiont contributions to lower termite physiology and potential immune functions

A

Sequencing statistics

 

Sample

# Reads

rRNA

 

 C18

97,357,292

3.0 %

 

 C21

96,954,778

6.3 %

 

 C22*

95,291,086

1.2 %

 

 B18

75,834,616

21.5 %

 

 B21

83,141,808

14.9 %

 

 B22

58,954,982

27.3 %

B

Assembly statistics

 

All

No. Contigs

2,107,824

  

N50

356

  

Avg. Length

361

 

>500 bases

No. Contigs

258,251

  

N50

652

  

Avg. Length

704

  1. A) Summary of sequencing statistics. * Indicates the library used for Trinity assembly which was selected because of low rRNA contamination. B) Summary of de novo Trinity assembly. Samples are labelled with a letter indicating their treatment (C = control, B = Beauveria) and colony number
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BMC Genomics

ISSN: 1471-2164

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