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Table 1 RNA-seq data statistics

From: De novo assembly and transcriptome characterization of spruce dwarf mistletoe Arceuthobium sichuanense uncovers gene expression profiling associated with plant development

Samplesa

Raw reads

Clean readsb

Q20(%)c

Q30(%)d

Mapped reads

Stem 1

59,102,236

57,577,862

93.85

88.22

47,226,724e (82.02 %)f

Stem 2

67,819,362

66,055,988

94.11

88.62

53,359,164 (80.78 %)

Flower

67,947,254

66,335,064

93.72

88.03

53,283,472 (80.32 %)

Fruit 1

75,874,632

74,068,030

93.49

87.66

60,369,578 (81.51 %)

Fruit 2

68,449,270

66,996,440

93.57

87.79

54,771,500 (81.75 %)

Seed 1

69,280,068

67,642,194

93.84

88.16

53,799,756 (79.54 %)

Seed 2

59,641,868

58,099,130

93.58

87.7

46,526,234 (80.08 %)

Total reads

468,114,690

456,774,708

   
  1. a1 and 2 represent two independent biological replicates
  2. bThe number of reads generated from sequencing after filtering low quality reads (Q ≤ 5)
  3. cQ20: The percentage of bases with a Phred value >20
  4. dQ30: The percentage of bases with a Phred value >30
  5. eThe number of reads from clean data that were mapped back onto the assembled transcriptome
  6. fThe percentages of reads account for the mapped reads