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Table 1 RNA-seq data statistics

From: De novo assembly and transcriptome characterization of spruce dwarf mistletoe Arceuthobium sichuanense uncovers gene expression profiling associated with plant development

Samplesa Raw reads Clean readsb Q20(%)c Q30(%)d Mapped reads
Stem 1 59,102,236 57,577,862 93.85 88.22 47,226,724e (82.02 %)f
Stem 2 67,819,362 66,055,988 94.11 88.62 53,359,164 (80.78 %)
Flower 67,947,254 66,335,064 93.72 88.03 53,283,472 (80.32 %)
Fruit 1 75,874,632 74,068,030 93.49 87.66 60,369,578 (81.51 %)
Fruit 2 68,449,270 66,996,440 93.57 87.79 54,771,500 (81.75 %)
Seed 1 69,280,068 67,642,194 93.84 88.16 53,799,756 (79.54 %)
Seed 2 59,641,868 58,099,130 93.58 87.7 46,526,234 (80.08 %)
Total reads 468,114,690 456,774,708    
  1. a1 and 2 represent two independent biological replicates
  2. bThe number of reads generated from sequencing after filtering low quality reads (Q ≤ 5)
  3. cQ20: The percentage of bases with a Phred value >20
  4. dQ30: The percentage of bases with a Phred value >30
  5. eThe number of reads from clean data that were mapped back onto the assembled transcriptome
  6. fThe percentages of reads account for the mapped reads