|
Sample-ID
|
Raw reads
|
Contaminants
|
Adapters
|
Trimmed reads
|
Clean reads
|
Mapped reads
|
|---|
|
Ac-reproductive
|
154,854,698
|
31,372,885
|
5,868,855
|
2,684,238
|
114,928,720
|
109,400,649 (95.19%)
|
|
Ac-reproductive
|
376,336,622
|
96,168,948
|
3,863,069
|
5,785,505
|
270,519,100
|
259,373,713 (95.88%)
|
|
Ac-reproductive
|
460,610,232
|
167,624,944
|
3,759,060
|
6,705,901
|
282,520,327
|
269,524,392 (95.40%)
|
|
Am-not reproductive
|
10,427,368
|
2,019,087
|
2,294,687
|
535,882
|
5,577,712
|
5,306,077 (95.13%)
|
|
Am-reproductive
|
146,287,844
|
27,746,078
|
871,943
|
1,942,313
|
115,727,510
|
111,179,419 (96.07%)
|
|
Am-reproductive
|
203,052,598
|
30,479,539
|
1,337,684
|
3,330,200
|
167,905,175
|
161,793,427 (96.36%)
|
|
Am-reproductive
|
209,363,152
|
44,563,144
|
1,102,128
|
2,502,475
|
161,195,405
|
153,861,014 (95.45%)
|
|
Am-reproductive
|
264,092,696
|
91,851,166
|
4,377,311
|
2,797,800
|
165,066,419
|
157,324,804 (95.31%)
|
|
Am-reproductive
|
303,036,016
|
79,679,461
|
2,046,179
|
4,996,895
|
216,313,481
|
206,579,374 (95.50%)
|
|
Undetermineda
|
56,563,734
|
20,373,131
|
1,259,132
|
4,851,428
|
30,080,043
|
28,693,353 (95.39%)
|
|
Total reads
|
2,184,624,960
|
591,878,383
|
26,780,048
|
36,132,637
|
1,529,833,892
|
1,463,036,222
|
-
aReads where the barcode could not be decoded. The order of the sample-ID is the same as in Fig. 1
