Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees ( Apis mellifera )

Table 2 Sequencing reads and mapping summary

Sample-ID	Raw reads	Contaminants	Adapters	Trimmed reads	Clean reads	Mapped reads
Ac-reproductive	154,854,698	31,372,885	5,868,855	2,684,238	114,928,720	109,400,649 (95.19%)
Ac-reproductive	376,336,622	96,168,948	3,863,069	5,785,505	270,519,100	259,373,713 (95.88%)
Ac-reproductive	460,610,232	167,624,944	3,759,060	6,705,901	282,520,327	269,524,392 (95.40%)
Am-not reproductive	10,427,368	2,019,087	2,294,687	535,882	5,577,712	5,306,077 (95.13%)
Am-reproductive	146,287,844	27,746,078	871,943	1,942,313	115,727,510	111,179,419 (96.07%)
Am-reproductive	203,052,598	30,479,539	1,337,684	3,330,200	167,905,175	161,793,427 (96.36%)
Am-reproductive	209,363,152	44,563,144	1,102,128	2,502,475	161,195,405	153,861,014 (95.45%)
Am-reproductive	264,092,696	91,851,166	4,377,311	2,797,800	165,066,419	157,324,804 (95.31%)
Am-reproductive	303,036,016	79,679,461	2,046,179	4,996,895	216,313,481	206,579,374 (95.50%)
Undetermined^a	56,563,734	20,373,131	1,259,132	4,851,428	30,080,043	28,693,353 (95.39%)
Total reads	2,184,624,960	591,878,383	26,780,048	36,132,637	1,529,833,892	1,463,036,222

^aReads where the barcode could not be decoded. The order of the sample-ID is the same as in Fig. 1