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Table 2 Sequencing reads and mapping summary

From: Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

Sample-ID Raw reads Contaminants Adapters Trimmed reads Clean reads Mapped reads
 Ac-reproductive 154,854,698 31,372,885 5,868,855 2,684,238 114,928,720 109,400,649 (95.19%)
 Ac-reproductive 376,336,622 96,168,948 3,863,069 5,785,505 270,519,100 259,373,713 (95.88%)
 Ac-reproductive 460,610,232 167,624,944 3,759,060 6,705,901 282,520,327 269,524,392 (95.40%)
Am-not reproductive 10,427,368 2,019,087 2,294,687   535,882 5,577,712 5,306,077 (95.13%)
 Am-reproductive 146,287,844 27,746,078  871,943 1,942,313 115,727,510 111,179,419 (96.07%)
 Am-reproductive 203,052,598 30,479,539 1,337,684 3,330,200 167,905,175 161,793,427 (96.36%)
 Am-reproductive 209,363,152 44,563,144 1,102,128 2,502,475 161,195,405 153,861,014 (95.45%)
 Am-reproductive 264,092,696 91,851,166 4,377,311 2,797,800 165,066,419 157,324,804 (95.31%)
 Am-reproductive 303,036,016 79,679,461 2,046,179 4,996,895 216,313,481 206,579,374 (95.50%)
 Undetermineda 56,563,734 20,373,131 1,259,132 4,851,428 30,080,043 28,693,353 (95.39%)
Total reads 2,184,624,960 591,878,383 26,780,048 36,132,637 1,529,833,892 1,463,036,222
  1. aReads where the barcode could not be decoded. The order of the sample-ID is the same as in Fig. 1