Table 2 Sequencing reads and mapping summary
Sample-ID | Raw reads | Contaminants | Adapters | Trimmed reads | Clean reads | Mapped reads |
|---|---|---|---|---|---|---|
 Ac-reproductive | 154,854,698 | 31,372,885 | 5,868,855 | 2,684,238 | 114,928,720 | 109,400,649 (95.19%) |
 Ac-reproductive | 376,336,622 | 96,168,948 | 3,863,069 | 5,785,505 | 270,519,100 | 259,373,713 (95.88%) |
 Ac-reproductive | 460,610,232 | 167,624,944 | 3,759,060 | 6,705,901 | 282,520,327 | 269,524,392 (95.40%) |
Am-not reproductive | 10,427,368 | 2,019,087 | 2,294,687 |   535,882 | 5,577,712 | 5,306,077 (95.13%) |
 Am-reproductive | 146,287,844 | 27,746,078 |  871,943 | 1,942,313 | 115,727,510 | 111,179,419 (96.07%) |
 Am-reproductive | 203,052,598 | 30,479,539 | 1,337,684 | 3,330,200 | 167,905,175 | 161,793,427 (96.36%) |
 Am-reproductive | 209,363,152 | 44,563,144 | 1,102,128 | 2,502,475 | 161,195,405 | 153,861,014 (95.45%) |
 Am-reproductive | 264,092,696 | 91,851,166 | 4,377,311 | 2,797,800 | 165,066,419 | 157,324,804 (95.31%) |
 Am-reproductive | 303,036,016 | 79,679,461 | 2,046,179 | 4,996,895 | 216,313,481 | 206,579,374 (95.50%) |
 Undetermineda | 56,563,734 | 20,373,131 | 1,259,132 | 4,851,428 | 30,080,043 | 28,693,353 (95.39%) |
Total reads | 2,184,624,960 | 591,878,383 | 26,780,048 | 36,132,637 | 1,529,833,892 | 1,463,036,222 |