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Table 4 Completeness of the V. jacobsoni transcriptome based on 248 CEGs

From: Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

 

# Protsa

% Completenessb

# Totalc

Averaged

% Orthoe

Completef

246

99.19

807

3.28

89.84

 Group 1

66

100.00

230

3.48

90.91

 Group 2

56

100.00

196

3.5

91.07

 Group 3

60

98.36

182

3.03

85.00

 Group 4

64

98.46

199

3.11

92.19

Partialg

248

100.00

967

3.9

98.39

 Group 1

66

100.00

271

4.11

96.97

 Group 2

56

100.00

229

4.09

100.00

 Group 3

61

100.00

221

3.62

98.36

 Group 4

65

100.00

246

3.78

98.46

  1. These results are based on the set of genes selected by Genis Parra
  2. aProts = number of 248 ultra-conserved CEGs present in genome, b%Completeness = percentage of 248 ultra-conserved CEGs present, cTotal = total number of CEGs present including putative orthologs, dAverage = average number of orthologs per CEG, e%Ortho = percentage of detected CEGS that have more than 1 ortholog, fComplete = refers to those predicted proteins in the set of 248 CEGs that when aligned to the HMM for the KOG for that protein-family, give an alignment length that is 70% of the protein length, gPartial = If a protein is not complete, but if it still exceeds a pre-computed minimum alignment score