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Table 1 The most differentially expressed genes (DEGs) during the time course in PHN-treated plants

From: Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure

AGI identifier Gene annotation 30 min 2 h 4 h 8 h 24 h
Ratio p-value Ratio p-value Ratio p-value Ratio p-value Ratio p-value
Genes rapidly upregulated after 30 min of treatmentwhose levles remained high throughout the time course
AT1G70800 EHB1__Calcium-dependent lipid-binding (CaLB domain) family protein 0.64 4 . 88E-02 1.23 2.80E-09 1.91 0.00E + 00 1.97 0.00E + 00 1.19 0.00E + 00
AT4G38620a ATMYB4_MYB4_myb domain protein 4 3.51 0.00E + 00 2.19 0. 00E + 00 2.30 0.00E + 00 2.18 0.00E + 00 1.94 0.00E + 00
AT2G47950 unknown protein 1.49 0.00E + 00 2.27 0.00E + 00 2.27 0.00E + 00 2.65 0.00E + 00 1.91 0.00E + 00
AT5G48540a receptor-like protein kinase-related family protein 1.42 0.00E + 00 2.44 0.00E + 00 3.27 0.00E + 00 3.48 0.00E + 00 3.51 0.00E + 00
AT5G59820a RHL41_ZAT12__C2H2-type zinc finger family protein 1.19 0.00E + 00 1.63 0.00E + 00 2.14 0.00E + 00 2.70 0.00E + 00 2.50 0.00E + 00
AT2G16900 Arabidopsis p hosp holip ase-like protein (PEARLI 4) family 0.98 3.61E-09 1.68 0.00E + 00 1.67 3.06E-11 1.61 0.00E + 00 2.16 0.00E + 00
AT1G68620 b alpha/beta-Hydrolases superfamily protein 0.93 6. 02E-08 2.18 0.00E + 00 1.68 2.29E-11 2.77 0.00E + 00 2.70 0.00E + 00
AT5G56630b PFK7__phosphofructokinase 7 0.91 2.45E-07 1.59 0.00E + 00 2.41 0.00E + 00 1.54 0.00E + 00 2.53 0.00E + 00
AT3G22840a ELIP_ELIP1__Chlorophyll A-B binding family protein 0.89 6.36E-07 1.40 0.00E + 00 2.19 0.00E + 00 1.70 0.00E + 00 2.38 0.00E + 00
AT1G63840 RING/U-box superfamily protein 0.83 1.31E-05 1.80 0.00E + 00 1.64 1.22E-10 2.10 0.00E + 00 2.16 0.00E + 00
AT2G36590 ATPROT3_ProT3__proline transporter 3 0.79 7. 54E-05 1.42 0.00E + 00 1.93 0.00E + 00 1.80 0.00E + 00 2.24 0.00E + 00
AT4G39670 Glycolipid transfer protein (GLTP) family protein 0.73 1.16E-03 1.26 9.30E-10 1.01 4.52E-02 1.42 0.00E + 00 2.13 0.00E + 00
AT4G27657 unknown protein 0.70 4.31E-03 1.26 6.61E-10 1.10 4.30E-03 1.75 0.00E + 00 0.74 2.19E-03
AT4G15248a B-box type zinc fnger family protein 1.39 0.00E + 00 1.75 0.00E + 00 1.04 1.93E-02 0.35 1.00E + 00 1.63 0.00E + 00
Genes differentially upregulated after 2 h whose levels remained high
AT2G35980 ATNHL10_NHL10_YLS9__Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 0.56 7.20E-01 1.72 0.00E + 00 1.96 0.00E + 00 1.81 0.00E + 00 2.34 0.00E + 00
AT3G22600 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 0.16 1.00E + 00 1.68 0.00E + 00 1.96 0.00E + 00 1.36 0.00E + 00 1.96 0.00E + 00
AT4G25640 ATDTX35_DTX35_FFT__detoxifying efflux carrier 35 0.27 1.00E + 00 1.66 0.00E + 00 1.40 6.73E-07 1.98 0.00E + 00 2.11 0.00E + 00
AT3G21560 UGT84A2__UDP-Glycosyltransferase superfamily protein 0.52 1.00E + 00 1.48 0.00E + 00 2.21 0.00E + 00 1.60 0.00E + 00 1.93 0.00E + 00
AT1G74010b Calcium-dependent phosphotriesterase superfamily protein 0.46 1.00E + 00 1.39 0.00E + 00 1.68 3.06E-11 1.32 0.00E + 00 2.50 0.00E + 00
AT1G75040 PR-5_PR5__pathogenesis-related gene 5 0.21 1.00E + 00 1.32 3.84E-11 1.50 2.24E-08 1.71 0.00E + 00 1.75 0.00E + 00
AT1G30700 FAD-binding Berberine family protein 0.48 1.00E + 00 1.26 9. 30E-10 1.06 1.24E-02 1.56 0.00E + 00 2.28 0.00E + 00
AT3G04300 RmlC-like cupins superfamily protein 0.37 1.00E + 00 1.25 1.14E-09 1.73 0.00E + 00 2.08 0.00E + 00 2.25 0.00E + 00
AT1G18980 RmlC-like cupins superfamily protein 0.2 1.00E + 00 1.16 6.26E-08 1.55 3.16E-09 1.57 0.00E + 00 1.59 0.00E + 00
AT1G76980 unknown protein 0.51 1.00E + 00 1.15 9.70E-08 1.67 4.59E-11 1.78 0.00E + 00 1.85 0.00E + 00
AT5G54500b FQR1__flavodoxin-like quinone reductase 1 0.47 1.00E + 00 1.12 3.41E-07 1.14 1.72E-03 1.50 0.00E + 00 1.79 0.00E + 00
AT1G74450 Protein of unknown function (DUF793) 0.41 1.00E + 00 1.09 1.17E-06 1.16 9.83E-04 1.06 3.11E-09 1.10 2.24E-11
AT3G04000b NAD(P)-binding Rossmann-fold superfamily protein 0.06 1.00E + 00 0.95 3.38E-04 1.16 1.01E-03 1.53 0.00E + 00 1.23 0.00E + 00
AT1G27120 Galactosyltransferase family protein 0.00 1.00E + 00 0.91 1.33E-03 2.00 0.00E + 00 2.30 0.00E + 00 2.45 0.00E + 00
AT2G17500 Auxin efflux carrier family protein −0.20 1.00E + 00 0.80 4.29E-02 1.19 3.99E-04 1.79 0.00E + 00 1.20 0.00E + 00
Genes differentially upregulated after 4 h of treatment
AT1G78340 ATGSTU22_GSTU22__glutathione S-transferase TAU 22 0.04 1.00E + 00 0.56 1.00E + 00 1.62 2.45E-10 1.75 0.00E + 00 1.69 0.00E + 00
AT1G17170 ATGSTU24_GST_GSTU24__glutathione S-transferase TAU 24 0.06 1. 00E + 00 0.39 1. 00E + 00 1.57 1.98E-09 2.00 0.00E + 00 2.05 0.00E + 00
AT3G51660 Tautomerase/MIF superfamily protein 0.10 1. 00E + 00 0.75 1.85E-01 1.47 5.93E-08 1.8 0.00E + 00 2.27 0.00E + 00
AT5G36270 b similar to DHAR2, glutathione dehydrogenase (ascorbate) 0.00 1. 00E + 00 0.55 1.00E + 00 1.38 1.16E-06 1.56 0.00E + 00 1.74 0.00E + 00
AT4G15480 UGT84A1__UDP-Glycosyltransferase superfamily protein 0.18 1.00E + 00 0.47 1.00E + 00 1.27 4.29E-05 1.02 2.61E-08 1.40 0.00E + 00
AT1G78380 ATGSTU19_GST8_GSTU19__glutathione S-transferase TAU 19 0.1 1. 00E + 00 0.69 1.00E + 00 1.23 1.42E-04 1.45 0.00E + 00 1.49 0.00E + 00
AT2G29500 HSP20-like chaperones superfamily protein 0.16 1. 00E + 00 0.29 1.00E + 00 1.15 1.22E-03 1.11 1.94E-10 1.53 0.00E + 00
AT1G75030 ATLP-3_TLP-3__thaumatin-like protein 3 0.19 1.00E + 00 0.59 1.00E + 00 1.13 1.98E-03 1.45 0.00E + 00 1.35 0.00E + 00
AT1G75270 b DHAR2__dehydroascorbate reductase 2 0.36 1.00E + 00 0.78 8.04E-02 1.09 5.83E-03 1.60 0.00E + 00 1.49 0.00E + 00
AT1G64900 CYP89_CYP89A2__cytochrome P450, family 89, subfamly A, polypeptide 2 −0.03 1. 00E + 00 0.33 1.00E + 00 1.08 6.73E-03 1.16 1.49E-11 1.19 0.00E + 00
AT3G13520b AGP12_ATAGP12__arabinogalactan protein 12 0.17 1. 00E + 00 0.57 1.00E + 00 1.08 6.96E-03 1.39 0.00E + 00 0.88 4.96E-06
AT2G12190 Cytochrome P450 superfamily protein −0.04 1.00E + 00 0.43 1.00E + 00 1.04 1.98E-02 0.97 3.77E-07 0.96 6.31E-08
AT4G13180b NAD(P)-binding Rossmann-fold superfamily protein 0.28 1.00E + 00 0.29 1.00E + 00 1.03 2.87E-02 1.07 1.53E-09 1.39 0.00E + 00
AT1G05680 UGT74E2__Uridine diphosphate glycosyltransferase 74E2 0.14 1.00E + 00 −0.05 1.00E + 00 1.01 4.09E-02 1.8 0.00E + 00 0.83 3.77E-05
AT2G48140 EDA4 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 0.02 1. 00E + 00 0.74 2.24E-01 1.20 2.82E-04 0.73 9.70E-03 0.40 1.00E + 00
AT3G09270 ATGSTU8_GSTU8__glutathione S-transferase TAU 8 −0.12 1. 00E + 00 0.41 1.00E + 00 1.15 1.12E-03 0.26 1.00E + 00 1.09 5.98E-11
AT1G23490 ARF 1_ATARF_ATARF 1_ATARFA1A__ADP-ribosylation fictor 1 0.48 1.00E + 00 0.76 1 49E-01 1.04 1.99E-02 0.64 2.29E-01 1.32 0.00E + 00
ATI G58370 b ATXYN1_RXF12_glycosyl hydrolase famly 10 protein/carbohydrate-binding domain-containing 0.17 1.00E + 00 0.64 1.00E + 00 1.13 2.13E-03 0.08 1.00E + 00 −0.86 1.10E-05
Genes differentially upregulated after 8 h of treatment
AT5G22140 FAD/NAD(P)-binding oxidoreductase family protein 0.3 1. 00E + 00 0.02 1.00E + 00 0.76 1.00E + 00 2.15 0.00E + 00 1.97 0.00E + 00
AT3G44190 FAD/NAD(P)-binding oxidoreductase family protein 0.03 1. 00E + 00 0.21 1.00E + 00 0.95 1.78E-01 2.05 0.00E + 00 2.01 0.00E + 00
AT2G23110 Late embryogenesis abundant protein, group 6 0.45 1.00E + 00 0.78 8.62E-02 0.51 1.00E + 00 1.87 0.00E + 00 2.04 0.00E + 00
AT5G64250 Aldolase-type TIM barrel family protein −0.01 1.00E + 00 0.35 1.00E + 00 0.59 1.00E + 00 1.62 0.00E + 00 1.55 0.00E + 00
AT3G28210a PMZ_SAP12__zinc finger (AN1-like) family protein 0.36 1. 00E + 00 0.52 1.00E + 00 0.98 8.17E-02 1.60 0.00E + 00 2.09 0.00E + 00
AT1G75280b NmrA-like negative transcriptional regulator family protein 0.15 1. 00E + 00 0.62 1.00E + 00 0.86 1.00E + 00 1.56 0.00E + 00 1.37 0.00E + 00
AT4G24160 alpha/beta-Hydrolases superfamily protein −0.01 1.00E + 00 0.40 1.00E + 00 0.59 1.00E + 00 1.52 0.00E + 00 1.25 0.00E + 00
AT3G10500 anac053_NAC053__NAC domain containing protein 53 0.12 1.00E + 00 0.77 1.19E-01 0.66 1.00E + 00 1.48 0.00E + 00 1.16 0.00E + 00
AT2G01180a ATLPP1_ATPAP1_LPP1_PAP1__phosphatidic acid phosphatase 1 0.20 1. 00E + 00 0.33 1.00E + 00 0.95 1.92E-01 1.44 0.00E + 00 1.97 0.00E + 00
AT5G54206 similar to 12-oxophytodienoate reductase OPR1 0.17 1. 00E + 00 0.15 1.00E + 00 0.29 1.00E + 00 1.41 0.00E + 00 2.04 0.00E + 00
AT2G29460 b ATGSTU4_GST22_GSTU4__glutathione S-transferase tau 4 0.12 1.00E + 00 0.52 1.00E + 00 1.00 5.79E-02 1.37 0.00E + 00 0.95 1.12E-07
AT4G34131 UGT73B3__UDP-glucosyl transferase 73B3 0.33 1.00E + 00 0.38 1.00E + 00 0.89 7.10E-01 1.31 0.00E + 00 1.38 0.00E + 00
AT1G05670 Pentatricopeptide repeat (PPR-like) superfamily protein 0.20 1. 00E + 00 0.02 1.00E + 00 0.71 1.00E + 00 1.30 0.00E + 00 0.69 1.70E-02
AT1G77120b ADH_ADH1_ATADH_ATADH1__alcohol dehydrogenase 1 −0.18 1. 00E + 00 0.54 1.00E + 00 0.25 1.00E + 00 1.30 0.00E + 00 1.02 3.44E-09
AT2G21620 RD2__Adenine nucleotide alpha hydrolases-like superfamily protein −0.01 1.00E + 00 0.75 1.73E-01 0.94 2.14E-01 1.28 0.00E + 00 1.82 0.00E + 00
AT1G66580 RPL10C_SAG24__senescence associated gene 24 0.32 1.00E + 00 0.45 1.00E + 00 0.63 1.00E + 00 1.26 0.00E + 00 1.44 0.00E + 00
AT2G36950 Heavy metal transport/detoxification superfamily protein 0.21 1. 00E + 00 0.45 1.00E + 00 −0.10 1.00E + 00 1.26 0.00E + 00 1.01 4.60E-09
AT1G72490 unknown protein −0.09 1. 00E + 00 0.20 1.00E + 00 0.02 1.00E + 00 1.25 0.00E + 00 1.10 2.24E-11
AT1G67600a Acid phosphatase/vanadium-dependent haloperoxidase-related protein 0.01 1.00E + 00 0.45 1.00E + 00 0.5 1.00E + 00 1.25 0.00E + 00 1.07 1.94E-10
AT5G27760 Hypoxia-responsive family protein 0.14 1.00E + 00 0.47 1.00E + 00 0.83 1.00E + 00 1.19 0.00E + 00 1.43 0.00E + 00
Genes differentially upregulated after 24 h of treatment
AT1G65290b mtACP2__mitochondrial acyl carrier protein 2 0.13 1.00E + 00 0.06 1.00E + 00 0.13 1.00E + 00 0.34 1.00E + 00 2.63 0.00E + 00
AT4G3 7990b ATCAD8_CAD-B2_ELI3_ELI3-2__elicitor-activated gene 3-2 0.07 1.00E + 00 0.3 1.00E + 00 0.34 1.00E + 00 0.00 1.00E + 00 2.43 0.00E + 00
AT5G25260 SPFH/Band 7/PHB domain-containing membrane-associated protein family −0.1 1.00E + 00 −0.06 1.00E + 00 0.30 1.00E + 00 0.04 1.00E + 00 2.07 0. 00E + 00
AT2G18690 unknown protein 0.11 1.00E + 00 0.70 7.28E-01 0.54 1.00E + 00 0.66 1.32E-01 1.98 0. 00E + 00
AT4G12490 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 0.22 1.00E + 00 0.07 1.00E + 00 0.66 1.00E + 00 0.28 1.00E + 00 1.90 0.00E + 00
AT1G14870 AtPCR2_PCR2_PLANT CADMIUM RESISTANCE 2 −0.03 1.00E + 00 0.51 1.00E + 00 0.03 1.00E + 00 0.48 1.00E + 00 1.76 0 00E + 00
AT2G23150 ATNRAMP3_NRAMP3__natural resistance-associated macrophage protein 3 −0.17 1.00E + 00 −0.16 1.00E + 00 0.01 1.00E + 00 0.59 1.00E + 00 1.69 0 00E + 00
AT2G17740 Cysteine/Histidine-rich C1 domain family protein −0.03 1.00E + 00 −0.15 1.00E + 00 0.66 1.00E + 00 0.20 1.00E + 00 1.67 0 00E + 00
AT1G66090 Disease resistance protein (TIR-NBS class) 0.36 1.00E + 00 0.29 1.00E + 00 0.66 1.00E + 00 0.55 1.00E + 00 1.67 0 00E + 00
AT5G06320 NHL3_NDR1/HN1-Ike 3 −0.28 1.00E + 00 0.11 1.00E + 00 −0.08 1.00E + 00 0.31 1.00E + 00 1.60 0 00E + 00
AT2G29350 SAG13__senescence-associated gene 13 −0.17 1.00E + 00 0.17 1.00E + 00 0.82 1.00E + 00 0.59 1.00E + 00 1.55 0 00E + 00
AT1G13330 AHP2__Arabidopsis Hop2 homolog 0.00 1.00E + 00 −0.09 1.00E + 00 0.69 1.00E + 00 0.36 1.00E + 00 1.55 0 00E + 00
AT5G13320 GDG1_GH3.12_PBS3_WIN3__Auxin-responsive GH3 family protein −0.1 1.00E + 00 −0.25 1.00E + 00 0.11 1.00E + 00 −0.07 1.00E + 00 1.54 0 00E + 00
AT5G17380b Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 0.04 1.00E + 00 0.03 1.00E + 00 0.35 1.00E + 00 0.65 1.76E-01 1.48 0 00E + 00
AT2G20142a Toll-Interleukin-Resistance (TIR) domain family protein 0.06 1.00E + 00 0.05 1.00E + 00 0.21 1.00E + 00 0.23 1.00E + 00 1.47 0 00E + 00
AT4G26200 ACS7_ATACS7__1-amino-cyclopropane-1-carboxylate synthase 7 0.22 1.00E + 00 −0.01 1.00E + 00 0.18 1.00E + 00 0.26 1.00E + 00 1.44 0 00E + 00
AT1G74710 ATICS1_EDS16_ICS1_SID2__ADC synthase superfamily protein 0.05 1.00E + 00 −0.19 1.00E + 00 0.14 1.00E + 00 −0.09 1.00E + 00 1.41 0 00E + 00
AT4G11890 Protein kinase superfamily protein 0.10 1.00E + 00 0.19 1.00E + 00 −0.04 1.00E + 00 0.56 1.00E + 00 1.38 0 00E + 00
AT5G25250 SPFH/Band 7/PHB domain-containing membrane-associated protein family 0.07 1.00E + 00 0.00 1.00E + 00 0.28 1.00E + 00 0.40 1.00E + 00 1.38 0.00E + 00
AT1G26380 FAD-binding Berberine family protein 0.24 1.00E + 00 0.24 1.00E + 00 0.34 1.00E + 00 0.43 1.00E + 00 1.38 0 00E + 00
Genes differentially down-regulated after 2 h of treatment whose levels remained low
AT1G26810 GALT1__galactosyltransferase1 −0.13 1.00E + 00 −1.16 7.36E-08 −1.71 7.64E-12 −1.65 0.00E + 00 −1.79 0 00E + 00
AT3G19450b ATCAD4_CAD_CAD-C_CAD4__GroES-like zinc-binding alcohol dehydrogenase family protein 0.03 1.00E + 00 −0.82 2.57E-02 −1.22 1.62E-04 −1.74 0.00E + 00 −1.74 0.00E + 00
AT5G48930b HCT__hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase −0.20 1.00E + 00 −1.17 5.58E-08 −1.11 3.21E-03 −1.50 0.00E + 00 −1.18 0 00E + 00
Genes differentially downregulated after 4 h of treatment whose levels remained low
AT1G08630b THA1__threonine aldolase 1 0.06 1.00E + 00 −0.54 1.00E + 00 −1.81 0.00E + 00 −0.92 3.97E-06 −1.62 0 00E + 00
AT1G43160a RAP2.6__related to AP2 6 0.02 1.00E + 00 −0.57 1.00E + 00 −1.57 1.81E-09 −1.16 7.45E-12 −0.99 1.74E-08
AT5G49730 ATFRO6_FRO6_FRO6__ferric reduction oxidase 6 −0.05 1.00E + 00 −0.27 1.00E + 00 −1.35 3.59E-06 −0.79 9.47E-04 −1.46 0 00E + 00
AT5G25460 Protein of unknown function, DUF642 −0.03 1.00E + 00 −0.55 1.00E + 00 −1.30 1.38E-05 −1.72 0.00E + 00 −1.41 0 00E + 00
AT4G29905 unknown protein 0.00 1.00E + 00 0.29 1.00E + 00 −1.16 9.80E-04 −0.76 3.17E-03 −1.83 0 00E + 00
AT1G05240 Peroxidase superfamily protein 0.08 1.00E + 00 0.19 1.00E + 00 −1.07 9. 14E-03 −1.48 0.00E + 00 −0.91 8 55E-07
AT4G23400 PIP1;5_PIP1D__plasma membrane intrinsic protein 1;5 −0.29 1.00E + 00 −0.16 1.00E + 00 −1.06 1.23E-02 −0.99 1.06E-07 −1.50 0 00E + 00
AT1G69100 Eukaryotic aspartyl protease family protein 0.13 1.00E + 00 −0.04 1.00E + 00 −1.06 1.39E-02 −1.21 0.00E + 00 −1.03 2 08E-09
AT5G01210b HXXXD-type acyl-transferase famiy protein 0.05 1.00E + 00 −0.78 8.20E-02 −1.65 7.64E-11 −1.37 0.00E + 00 −0.38 1.00E + 00
AT2G45960 ATHH2_PIP1;2_PIP1B_TMP-A__plasma membrane intrinsic protein 1B −0.17 1.00E + 00 −0.11 1.00E + 00 −1.14 1.71E-03 −0.77 2.47E-03 −0.37 1.00E + 00
AT1G65930b cICDH__cytosolic NADP + −dependent isocitrate dehydrogenase −0.03 1.00E + 00 −0.29 1.00E + 00 −1.13 2.23E-03 −0.96 5.06E-07 −0.56 1.00E + 00
AT4G14040 EDA38_SBP2__selenium-binding protein 2 0.21 1.00E + 00 −0.31 1.00E + 00 −1.01 3. 90E-02 −0.70 3.08E-02 −0.60 4.43E-01
AT1G64370 unknown protein −0.15 1.00E + 00 −0.22 1.00E + 00 −1.01 3. 93E-02 −0.77 1.80E-03 −0.16 1.00E + 00
Genes differentially downregulated afteer 8 h of treatment whose levels remained low
AT3G03780b ATMS2_MS2__methionine synthase 2 0.15 1.00E + 00 −0.55 1.00E + 00 −0.50 1.00E + 00 −1.66 0.00E + 00 −2.22 0 00E + 00
AT4G22210 LCR85__low-molecular-weight cysteine-rich 85 −0.16 1.00E + 00 −0.27 1.00E + 00 −0.69 1^+00 −1.56 0.00E + 00 −1.27 0 00E + 00
AT4G15390 HXXXD-type acyl-transferase famiy protein 0.08 1.00E + 00 −0.44 1.00E + 00 −0.70 1.00E + 00 −1.39 0.00E + 00 −1.54 0 00E + 00
AT3G59970b MTHFR1__methylenetetrahydrofolate reductase 1 0.02 1.00E + 00 −0.54 1.00E + 00 −0.40 1.^+0 −1.30 0.00E + 00 −1.06 2.69E-10
AT2G44160b MTHFR2__methylenetetrahydrofolate reductase 2 0.20 1.00E + 00 −0.28 1.00E + 00 −0.52 1.00E + 00 −1.28 0.00E + 00 −0.95 1 38E-07
AT5G39210 CRR7__chlororespiratory reduction 7 −0.09 1.00E + 00 0.14 1.00E + 00 −0.58 1.^+0 −1.27 0.00E + 00 −0.89 2 07E-06
AT3G19820 CBB1_DIM_DIM1_DWF1_EVE1__cell elongation protein/DWARF1 / DIMINUTO (DIM) 0.07 1.00E + 00 −0.11 1.00E + 00 −0.45 1.00E + 00 −1.27 0.00E + 00 −1.15 0 00E + 00
AT1G29600a Zinc finger C-x8-C-x5-C-x3-H type family protein −0.10 1.00E + 00 −0.15 1.00E + 00 −0.19 1.00E + 00 −1.22 0.00E + 00 −1.02 2.45E-09
AT4G12545 Bifunctional mhbitor/lpkl-transfer protein/seed storage 2S albumin superfamily protein −0.03 1.00E + 00 0.28 1.00E + 00 −0.70 1.00E + 00 −1.20 0.00E + 00 −1.66 0 00E + 00
AT1G11860b Glycine cleavage T-protein family 0.00 1.00E + 00 −0.16 1.00E + 00 −0.32 1.00E + 00 −1.17 7.45E-12 −1.14 0.00E + 00
AT3G60320 Protein of unknown function (DUF630 and DUF632) 0.03 1.00E + 00 −0.18 1.00E + 00 −0.72 1.00E + 00 −1.10 3.72E-10 −0.77 6.14E-04
AT5G24760 GroES-like zinc-binding dehydrogenase family protein −0.04 1.00E + 00 −0.50 1.00E + 00 −0.34 1.00E + 00 −1.08 1.44E-09 −1.19 0.00E + 00
AT5G17920b ATCIMS_ATMETS_ATMS1__Cobalamin-independent synthase family protein 0.13 1.00E + 00 −0.26 1.00E + 00 −0.41 1.00E + 00 −1.06 3.43E-09 −0.99 1.51E-08
AT3G06350b EMB3004_MEE32__dehydroquinate dehydratase, putative/shikimate dehydrogenase, putative −0.11 1.00E + 00 −0.25 1.00E + 00 −0.62 1.00E + 00 −1.03 1.42E-08 −0.85 1.91E-05
AT3G16390b NSP3__nitrile specifier protein 3 0.06 1.00E + 00 0.20 1.00E + 00 0.30 1.00E + 00 −1.03 1.88E-08 −1.02 2.19E-09
AT1G29560a Zinc finger C-x8-C-x5-C-x3-H type family protein 0.15 1.00E + 00 −0.38 1.00E + 00 −0.45 1.00E + 00 −1.00 8.83E-08 −0.93 2.64E-07
AT5G03300b ADK2__adenosine kinase 2 0.16 1.00E + 00 −0.30 1.00E + 00 0.03 1.00E + 00 −0.99 1.40E-07 −0.94 1.98E-07
AT1G80830 ATNRAMP1_NRAMP1_PMIT1__natural resistance-associated macrophage protein 1 −0.02 1.00E + 00 −0.46 1.00E + 00 −0.93 2.79E-01 −0.99 1.54E-07 −0.75 1.16E-03
AT4G14890 FdC2__2Fe-2S ferredoxin-like superfamily protein −0.10 1.00E + 00 −0.19 1.00E + 00 −0.48 1.00E + 00 −0.97 2.69E-07 −1.01 4.56E-09
AT5G65010b ASN2__asparagine synthetase 2 −0.03 1.00E + 00 0.07 1.00E + 00 −0.15 1.00E + 00 −0.97 2.79E-07 −0.84 3.11E-05
Genes differentially downregulated only after 24 h of treatment
AT5G36910a THI2.2__thionin 2.2 −0.16 1.00E + 00 0.04 1.00E + 00 −0.38 1.00E + 00 0.21 1.00E + 00 −1.73 0.00E + 00
AT2G25510 unknown protein −0.09 1.00E + 00 0.23 1.00E + 00 0.11 1.00E + 00 −0.40 1.00E + 00 −1.52 0.00E + 00
AT1G17190 ATGSTU26_GSTU26__glutathione S-transferase tau 26 −0.01 1.00E + 00 −0.19 1.00E + 00 0.32 1.00E + 00 −0.31 1.00E + 00 −1.41 0.00E + 00
AT3G16450 JAL33__Mannose-binding lectin superfamily protein 0.00 1.00E + 00 0.28 1.00E + 00 −0.51 1.00E + 00 −0.67 9.73E-02 −1.30 0.00E + 00
AT4G35100 PIP2;7_PIP3_PIP3A_SIMIP__plasma membrane intrinsic protein 3 0.01 1.00E + 00 0.10 1.00E + 00 −0.81 1.00E + 00 −0.67 7.65E-02 −1.26 0.00E + 00
AT3G28270 Protein ofunknown function (DUF677) −0.26 1.00E + 00 0.46 1.00E + 00 0.25 1.00E + 00 −0.57 1.00E + 00 −1.26 0.00E + 00
AT5G51720 2 iron, 2 sulfur cluster binding −0.06 1.00E + 00 −0.25 1.00E + 00 −0.17 1.00E + 00 −0.38 1.00E + 00 −1.24 0.00E + 00
AT5G24420b PGL5__6-phosphogluconolactonase 5 0.00 1.00E + 00 0.05 1.00E + 00 −0.32 1.00E + 00 −0.02 1.00E + 00 −1.20 0.00E + 00
AT4G13870a ATWEX_ATWRNEXO_WEX_WRNEXO__Werner syndrome-like exonuclease −0.02 1.00E + 00 0.10 1.00E + 00 0.61 1.00E + 00 −0.34 1.00E + 00 −1.19 0.00E + 00
AT3G02380b ATCOL2_COL2__CONSTANS-like 2 −0.11 1.00E + 00 −0.60 1.00E + 00 −0.41 1.00E + 00 0.04 1.00E + 00 −1.15 0.00E + 00
AT4G16980b arab inogalactan-p rotein family 0.07 1.00E + 00 −0.10 1.00E + 00 −0.84 1.00E + 00 −0.54 1.00E + 00 −1.14 0.00E + 00
AT3G45140 ATLOX2_LOX2__lipoxygenase 2 −0.12 1.00E + 00 0.51 1.00E + 00 0.51 1.00E + 00 −0.24 1.00E + 00 −1.11 1.50E-11
AT1G12090 ELP__extensin-like protein −0.06 1.00E + 00 −0.04 1.00E + 00 −0.52 1.00E + 00 −0.33 1.00E + 00 −1.08 8.97E-11
AT1G54000 GLL22__GDSL-like Lipase/Acylhydrolase superfamily protein 0.03 1.00E + 00 −0.28 1.00E + 00 −0.77 1.00E + 00 −0.55 1.00E + 00 −1.06 3.59E-10
AT5G58260b NdhN__oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.04 1.00E + 00 −0.01 1.00E + 00 −0.14 1.00E + 00 −0.58 1.00E + 00 −1.05 6.51E-10
AT3G16420 JAL30_PBP1__PYK10-binding protein 1 −0.04 1.00E + 00 0.07 1.00E + 00 0.01 1.00E + 00 −0.64 2.36E-01 −1.02 2.91E-09
AT3G16440 ATMLP-300B_MEE36_MLP-300B__myrosinase-binding protein-like protein-300B −0.24 1.00E + 00 0.21 1.00E + 00 −0.37 1.00E + 00 −0.38 1.00E + 00 −0.91 9.46E-07
AT3G15850b ADS3_FAD5_FADB_JB67__fatty acid desaturase 5 −0.21 1.00E + 00 −0.01 1.00E + 00 −0.68 1.00E + 00 −0.06 1.00E + 00 −0.91 9.94E-07
AT3G01480 ATCYP38_CYP38__cyclophilin 38 0.07 1.00E + 00 0.01 1.00E + 00 −0.76 1.00E + 00 −0.54 1.00E + 00 −0.88 4.47E-06
AT3G11170b AtFAD7_FAD7_FADD__fatty acid desaturase 7 0.03 1.00E + 00 −0.12 1.00E + 00 −0.30 1.00E + 00 −0.63 2.78E −01 −0.87 7 28E-06
  1. Of all the DEGs, a maximum of 20 genes for each different response pattern are listed. AGI identifiers and gene annotation in bold correspond to genes involved in the xenome. Expression changes are given as log2. Expression changes in bold correspond to genes differentially expressed at the significant threshold of Bonferroni p-value <0.05 in our study. aregulatory genes. bmetabolic genes identified using either the MapMan pathway analysis tool choosing Metabolism-overview or the AraGEM tool [84]