Table 1 The most differentially expressed genes (DEGs) during the time course in PHN-treated plants
AGI identifier | Gene annotation | 30Â min | 2Â h | 4Â h | 8Â h | 24Â h | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Ratio | p-value | Ratio | p-value | Ratio | p-value | Ratio | p-value | Ratio | p-value | ||
Genes rapidly upregulated after 30Â min of treatmentwhose levles remained high throughout the time course | |||||||||||
AT1G70800 | EHB1__Calcium-dependent lipid-binding (CaLB domain) family protein | 0.64 | 4 . 88E-02 | 1.23 | 2.80E-09 | 1.91 | 0.00E + 00 | 1.97 | 0.00E + 00 | 1.19 | 0.00E + 00 |
AT4G38620a | ATMYB4_MYB4_myb domain protein 4 | 3.51 | 0.00E + 00 | 2.19 | 0. 00E + 00 | 2.30 | 0.00E + 00 | 2.18 | 0.00E + 00 | 1.94 | 0.00E + 00 |
AT2G47950 | unknown protein | 1.49 | 0.00E + 00 | 2.27 | 0.00E + 00 | 2.27 | 0.00E + 00 | 2.65 | 0.00E + 00 | 1.91 | 0.00E + 00 |
AT5G48540a | receptor-like protein kinase-related family protein | 1.42 | 0.00E + 00 | 2.44 | 0.00E + 00 | 3.27 | 0.00E + 00 | 3.48 | 0.00E + 00 | 3.51 | 0.00E + 00 |
AT5G59820a | RHL41_ZAT12__C2H2-type zinc finger family protein | 1.19 | 0.00E + 00 | 1.63 | 0.00E + 00 | 2.14 | 0.00E + 00 | 2.70 | 0.00E + 00 | 2.50 | 0.00E + 00 |
AT2G16900 | Arabidopsis p hosp holip ase-like protein (PEARLI 4) family | 0.98 | 3.61E-09 | 1.68 | 0.00E + 00 | 1.67 | 3.06E-11 | 1.61 | 0.00E + 00 | 2.16 | 0.00E + 00 |
AT1G68620 b | alpha/beta-Hydrolases superfamily protein | 0.93 | 6. 02E-08 | 2.18 | 0.00E + 00 | 1.68 | 2.29E-11 | 2.77 | 0.00E + 00 | 2.70 | 0.00E + 00 |
AT5G56630b | PFK7__phosphofructokinase 7 | 0.91 | 2.45E-07 | 1.59 | 0.00E + 00 | 2.41 | 0.00E + 00 | 1.54 | 0.00E + 00 | 2.53 | 0.00E + 00 |
AT3G22840a | ELIP_ELIP1__Chlorophyll A-B binding family protein | 0.89 | 6.36E-07 | 1.40 | 0.00E + 00 | 2.19 | 0.00E + 00 | 1.70 | 0.00E + 00 | 2.38 | 0.00E + 00 |
AT1G63840 | RING/U-box superfamily protein | 0.83 | 1.31E-05 | 1.80 | 0.00E + 00 | 1.64 | 1.22E-10 | 2.10 | 0.00E + 00 | 2.16 | 0.00E + 00 |
AT2G36590 | ATPROT3_ProT3__proline transporter 3 | 0.79 | 7. 54E-05 | 1.42 | 0.00E + 00 | 1.93 | 0.00E + 00 | 1.80 | 0.00E + 00 | 2.24 | 0.00E + 00 |
AT4G39670 | Glycolipid transfer protein (GLTP) family protein | 0.73 | 1.16E-03 | 1.26 | 9.30E-10 | 1.01 | 4.52E-02 | 1.42 | 0.00E + 00 | 2.13 | 0.00E + 00 |
AT4G27657 | unknown protein | 0.70 | 4.31E-03 | 1.26 | 6.61E-10 | 1.10 | 4.30E-03 | 1.75 | 0.00E + 00 | 0.74 | 2.19E-03 |
AT4G15248a | B-box type zinc fnger family protein | 1.39 | 0.00E + 00 | 1.75 | 0.00E + 00 | 1.04 | 1.93E-02 | 0.35 | 1.00E + 00 | 1.63 | 0.00E + 00 |
Genes differentially upregulated after 2Â h whose levels remained high | |||||||||||
AT2G35980 | ATNHL10_NHL10_YLS9__Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | 0.56 | 7.20E-01 | 1.72 | 0.00E + 00 | 1.96 | 0.00E + 00 | 1.81 | 0.00E + 00 | 2.34 | 0.00E + 00 |
AT3G22600 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | 0.16 | 1.00E + 00 | 1.68 | 0.00E + 00 | 1.96 | 0.00E + 00 | 1.36 | 0.00E + 00 | 1.96 | 0.00E + 00 |
AT4G25640 | ATDTX35_DTX35_FFT__detoxifying efflux carrier 35 | 0.27 | 1.00E + 00 | 1.66 | 0.00E + 00 | 1.40 | 6.73E-07 | 1.98 | 0.00E + 00 | 2.11 | 0.00E + 00 |
AT3G21560 | UGT84A2__UDP-Glycosyltransferase superfamily protein | 0.52 | 1.00E + 00 | 1.48 | 0.00E + 00 | 2.21 | 0.00E + 00 | 1.60 | 0.00E + 00 | 1.93 | 0.00E + 00 |
AT1G74010b | Calcium-dependent phosphotriesterase superfamily protein | 0.46 | 1.00E + 00 | 1.39 | 0.00E + 00 | 1.68 | 3.06E-11 | 1.32 | 0.00E + 00 | 2.50 | 0.00E + 00 |
AT1G75040 | PR-5_PR5__pathogenesis-related gene 5 | 0.21 | 1.00E + 00 | 1.32 | 3.84E-11 | 1.50 | 2.24E-08 | 1.71 | 0.00E + 00 | 1.75 | 0.00E + 00 |
AT1G30700 | FAD-binding Berberine family protein | 0.48 | 1.00E + 00 | 1.26 | 9. 30E-10 | 1.06 | 1.24E-02 | 1.56 | 0.00E + 00 | 2.28 | 0.00E + 00 |
AT3G04300 | RmlC-like cupins superfamily protein | 0.37 | 1.00E + 00 | 1.25 | 1.14E-09 | 1.73 | 0.00E + 00 | 2.08 | 0.00E + 00 | 2.25 | 0.00E + 00 |
AT1G18980 | RmlC-like cupins superfamily protein | 0.2 | 1.00E + 00 | 1.16 | 6.26E-08 | 1.55 | 3.16E-09 | 1.57 | 0.00E + 00 | 1.59 | 0.00E + 00 |
AT1G76980 | unknown protein | 0.51 | 1.00E + 00 | 1.15 | 9.70E-08 | 1.67 | 4.59E-11 | 1.78 | 0.00E + 00 | 1.85 | 0.00E + 00 |
AT5G54500b | FQR1__flavodoxin-like quinone reductase 1 | 0.47 | 1.00E + 00 | 1.12 | 3.41E-07 | 1.14 | 1.72E-03 | 1.50 | 0.00E + 00 | 1.79 | 0.00E + 00 |
AT1G74450 | Protein of unknown function (DUF793) | 0.41 | 1.00E + 00 | 1.09 | 1.17E-06 | 1.16 | 9.83E-04 | 1.06 | 3.11E-09 | 1.10 | 2.24E-11 |
AT3G04000b | NAD(P)-binding Rossmann-fold superfamily protein | 0.06 | 1.00E + 00 | 0.95 | 3.38E-04 | 1.16 | 1.01E-03 | 1.53 | 0.00E + 00 | 1.23 | 0.00E + 00 |
AT1G27120 | Galactosyltransferase family protein | 0.00 | 1.00E + 00 | 0.91 | 1.33E-03 | 2.00 | 0.00E + 00 | 2.30 | 0.00E + 00 | 2.45 | 0.00E + 00 |
AT2G17500 | Auxin efflux carrier family protein | −0.20 | 1.00E + 00 | 0.80 | 4.29E-02 | 1.19 | 3.99E-04 | 1.79 | 0.00E + 00 | 1.20 | 0.00E + 00 |
Genes differentially upregulated after 4Â h of treatment | |||||||||||
AT1G78340 | ATGSTU22_GSTU22__glutathione S-transferase TAU 22 | 0.04 | 1.00E + 00 | 0.56 | 1.00E + 00 | 1.62 | 2.45E-10 | 1.75 | 0.00E + 00 | 1.69 | 0.00E + 00 |
AT1G17170 | ATGSTU24_GST_GSTU24__glutathione S-transferase TAU 24 | 0.06 | 1. 00E + 00 | 0.39 | 1. 00E + 00 | 1.57 | 1.98E-09 | 2.00 | 0.00E + 00 | 2.05 | 0.00E + 00 |
AT3G51660 | Tautomerase/MIF superfamily protein | 0.10 | 1. 00E + 00 | 0.75 | 1.85E-01 | 1.47 | 5.93E-08 | 1.8 | 0.00E + 00 | 2.27 | 0.00E + 00 |
AT5G36270 b | similar to DHAR2, glutathione dehydrogenase (ascorbate) | 0.00 | 1. 00E + 00 | 0.55 | 1.00E + 00 | 1.38 | 1.16E-06 | 1.56 | 0.00E + 00 | 1.74 | 0.00E + 00 |
AT4G15480 | UGT84A1__UDP-Glycosyltransferase superfamily protein | 0.18 | 1.00E + 00 | 0.47 | 1.00E + 00 | 1.27 | 4.29E-05 | 1.02 | 2.61E-08 | 1.40 | 0.00E + 00 |
AT1G78380 | ATGSTU19_GST8_GSTU19__glutathione S-transferase TAU 19 | 0.1 | 1. 00E + 00 | 0.69 | 1.00E + 00 | 1.23 | 1.42E-04 | 1.45 | 0.00E + 00 | 1.49 | 0.00E + 00 |
AT2G29500 | HSP20-like chaperones superfamily protein | 0.16 | 1. 00E + 00 | 0.29 | 1.00E + 00 | 1.15 | 1.22E-03 | 1.11 | 1.94E-10 | 1.53 | 0.00E + 00 |
AT1G75030 | ATLP-3_TLP-3__thaumatin-like protein 3 | 0.19 | 1.00E + 00 | 0.59 | 1.00E + 00 | 1.13 | 1.98E-03 | 1.45 | 0.00E + 00 | 1.35 | 0.00E + 00 |
AT1G75270 b | DHAR2__dehydroascorbate reductase 2 | 0.36 | 1.00E + 00 | 0.78 | 8.04E-02 | 1.09 | 5.83E-03 | 1.60 | 0.00E + 00 | 1.49 | 0.00E + 00 |
AT1G64900 | CYP89_CYP89A2__cytochrome P450, family 89, subfamly A, polypeptide 2 | −0.03 | 1. 00E + 00 | 0.33 | 1.00E + 00 | 1.08 | 6.73E-03 | 1.16 | 1.49E-11 | 1.19 | 0.00E + 00 |
AT3G13520b | AGP12_ATAGP12__arabinogalactan protein 12 | 0.17 | 1. 00E + 00 | 0.57 | 1.00E + 00 | 1.08 | 6.96E-03 | 1.39 | 0.00E + 00 | 0.88 | 4.96E-06 |
AT2G12190 | Cytochrome P450 superfamily protein | −0.04 | 1.00E + 00 | 0.43 | 1.00E + 00 | 1.04 | 1.98E-02 | 0.97 | 3.77E-07 | 0.96 | 6.31E-08 |
AT4G13180b | NAD(P)-binding Rossmann-fold superfamily protein | 0.28 | 1.00E + 00 | 0.29 | 1.00E + 00 | 1.03 | 2.87E-02 | 1.07 | 1.53E-09 | 1.39 | 0.00E + 00 |
AT1G05680 | UGT74E2__Uridine diphosphate glycosyltransferase 74E2 | 0.14 | 1.00E + 00 | −0.05 | 1.00E + 00 | 1.01 | 4.09E-02 | 1.8 | 0.00E + 00 | 0.83 | 3.77E-05 |
AT2G48140 | EDA4 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | 0.02 | 1. 00E + 00 | 0.74 | 2.24E-01 | 1.20 | 2.82E-04 | 0.73 | 9.70E-03 | 0.40 | 1.00E + 00 |
AT3G09270 | ATGSTU8_GSTU8__glutathione S-transferase TAU 8 | −0.12 | 1. 00E + 00 | 0.41 | 1.00E + 00 | 1.15 | 1.12E-03 | 0.26 | 1.00E + 00 | 1.09 | 5.98E-11 |
AT1G23490 | ARF 1_ATARF_ATARF 1_ATARFA1A__ADP-ribosylation fictor 1 | 0.48 | 1.00E + 00 | 0.76 | 1 49E-01 | 1.04 | 1.99E-02 | 0.64 | 2.29E-01 | 1.32 | 0.00E + 00 |
ATI G58370 b | ATXYN1_RXF12_glycosyl hydrolase famly 10 protein/carbohydrate-binding domain-containing | 0.17 | 1.00E + 00 | 0.64 | 1.00E + 00 | 1.13 | 2.13E-03 | 0.08 | 1.00E + 00 | −0.86 | 1.10E-05 |
Genes differentially upregulated after 8Â h of treatment | |||||||||||
AT5G22140 | FAD/NAD(P)-binding oxidoreductase family protein | 0.3 | 1. 00E + 00 | 0.02 | 1.00E + 00 | 0.76 | 1.00E + 00 | 2.15 | 0.00E + 00 | 1.97 | 0.00E + 00 |
AT3G44190 | FAD/NAD(P)-binding oxidoreductase family protein | 0.03 | 1. 00E + 00 | 0.21 | 1.00E + 00 | 0.95 | 1.78E-01 | 2.05 | 0.00E + 00 | 2.01 | 0.00E + 00 |
AT2G23110 | Late embryogenesis abundant protein, group 6 | 0.45 | 1.00E + 00 | 0.78 | 8.62E-02 | 0.51 | 1.00E + 00 | 1.87 | 0.00E + 00 | 2.04 | 0.00E + 00 |
AT5G64250 | Aldolase-type TIM barrel family protein | −0.01 | 1.00E + 00 | 0.35 | 1.00E + 00 | 0.59 | 1.00E + 00 | 1.62 | 0.00E + 00 | 1.55 | 0.00E + 00 |
AT3G28210a | PMZ_SAP12__zinc finger (AN1-like) family protein | 0.36 | 1. 00E + 00 | 0.52 | 1.00E + 00 | 0.98 | 8.17E-02 | 1.60 | 0.00E + 00 | 2.09 | 0.00E + 00 |
AT1G75280b | NmrA-like negative transcriptional regulator family protein | 0.15 | 1. 00E + 00 | 0.62 | 1.00E + 00 | 0.86 | 1.00E + 00 | 1.56 | 0.00E + 00 | 1.37 | 0.00E + 00 |
AT4G24160 | alpha/beta-Hydrolases superfamily protein | −0.01 | 1.00E + 00 | 0.40 | 1.00E + 00 | 0.59 | 1.00E + 00 | 1.52 | 0.00E + 00 | 1.25 | 0.00E + 00 |
AT3G10500 | anac053_NAC053__NAC domain containing protein 53 | 0.12 | 1.00E + 00 | 0.77 | 1.19E-01 | 0.66 | 1.00E + 00 | 1.48 | 0.00E + 00 | 1.16 | 0.00E + 00 |
AT2G01180a | ATLPP1_ATPAP1_LPP1_PAP1__phosphatidic acid phosphatase 1 | 0.20 | 1. 00E + 00 | 0.33 | 1.00E + 00 | 0.95 | 1.92E-01 | 1.44 | 0.00E + 00 | 1.97 | 0.00E + 00 |
AT5G54206 | similar to 12-oxophytodienoate reductase OPR1 | 0.17 | 1. 00E + 00 | 0.15 | 1.00E + 00 | 0.29 | 1.00E + 00 | 1.41 | 0.00E + 00 | 2.04 | 0.00E + 00 |
AT2G29460 b | ATGSTU4_GST22_GSTU4__glutathione S-transferase tau 4 | 0.12 | 1.00E + 00 | 0.52 | 1.00E + 00 | 1.00 | 5.79E-02 | 1.37 | 0.00E + 00 | 0.95 | 1.12E-07 |
AT4G34131 | UGT73B3__UDP-glucosyl transferase 73B3 | 0.33 | 1.00E + 00 | 0.38 | 1.00E + 00 | 0.89 | 7.10E-01 | 1.31 | 0.00E + 00 | 1.38 | 0.00E + 00 |
AT1G05670 | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.20 | 1. 00E + 00 | 0.02 | 1.00E + 00 | 0.71 | 1.00E + 00 | 1.30 | 0.00E + 00 | 0.69 | 1.70E-02 |
AT1G77120b | ADH_ADH1_ATADH_ATADH1__alcohol dehydrogenase 1 | −0.18 | 1. 00E + 00 | 0.54 | 1.00E + 00 | 0.25 | 1.00E + 00 | 1.30 | 0.00E + 00 | 1.02 | 3.44E-09 |
AT2G21620 | RD2__Adenine nucleotide alpha hydrolases-like superfamily protein | −0.01 | 1.00E + 00 | 0.75 | 1.73E-01 | 0.94 | 2.14E-01 | 1.28 | 0.00E + 00 | 1.82 | 0.00E + 00 |
AT1G66580 | RPL10C_SAG24__senescence associated gene 24 | 0.32 | 1.00E + 00 | 0.45 | 1.00E + 00 | 0.63 | 1.00E + 00 | 1.26 | 0.00E + 00 | 1.44 | 0.00E + 00 |
AT2G36950 | Heavy metal transport/detoxification superfamily protein | 0.21 | 1. 00E + 00 | 0.45 | 1.00E + 00 | −0.10 | 1.00E + 00 | 1.26 | 0.00E + 00 | 1.01 | 4.60E-09 |
AT1G72490 | unknown protein | −0.09 | 1. 00E + 00 | 0.20 | 1.00E + 00 | 0.02 | 1.00E + 00 | 1.25 | 0.00E + 00 | 1.10 | 2.24E-11 |
AT1G67600a | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | 0.01 | 1.00E + 00 | 0.45 | 1.00E + 00 | 0.5 | 1.00E + 00 | 1.25 | 0.00E + 00 | 1.07 | 1.94E-10 |
AT5G27760 | Hypoxia-responsive family protein | 0.14 | 1.00E + 00 | 0.47 | 1.00E + 00 | 0.83 | 1.00E + 00 | 1.19 | 0.00E + 00 | 1.43 | 0.00E + 00 |
Genes differentially upregulated after 24Â h of treatment | |||||||||||
AT1G65290b | mtACP2__mitochondrial acyl carrier protein 2 | 0.13 | 1.00E + 00 | 0.06 | 1.00E + 00 | 0.13 | 1.00E + 00 | 0.34 | 1.00E + 00 | 2.63 | 0.00E + 00 |
AT4G3 7990b | ATCAD8_CAD-B2_ELI3_ELI3-2__elicitor-activated gene 3-2 | 0.07 | 1.00E + 00 | 0.3 | 1.00E + 00 | 0.34 | 1.00E + 00 | 0.00 | 1.00E + 00 | 2.43 | 0.00E + 00 |
AT5G25260 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | −0.1 | 1.00E + 00 | −0.06 | 1.00E + 00 | 0.30 | 1.00E + 00 | 0.04 | 1.00E + 00 | 2.07 | 0. 00E + 00 |
AT2G18690 | unknown protein | 0.11 | 1.00E + 00 | 0.70 | 7.28E-01 | 0.54 | 1.00E + 00 | 0.66 | 1.32E-01 | 1.98 | 0. 00E + 00 |
AT4G12490 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | 0.22 | 1.00E + 00 | 0.07 | 1.00E + 00 | 0.66 | 1.00E + 00 | 0.28 | 1.00E + 00 | 1.90 | 0.00E + 00 |
AT1G14870 | AtPCR2_PCR2_PLANT CADMIUM RESISTANCE 2 | −0.03 | 1.00E + 00 | 0.51 | 1.00E + 00 | 0.03 | 1.00E + 00 | 0.48 | 1.00E + 00 | 1.76 | 0 00E + 00 |
AT2G23150 | ATNRAMP3_NRAMP3__natural resistance-associated macrophage protein 3 | −0.17 | 1.00E + 00 | −0.16 | 1.00E + 00 | 0.01 | 1.00E + 00 | 0.59 | 1.00E + 00 | 1.69 | 0 00E + 00 |
AT2G17740 | Cysteine/Histidine-rich C1 domain family protein | −0.03 | 1.00E + 00 | −0.15 | 1.00E + 00 | 0.66 | 1.00E + 00 | 0.20 | 1.00E + 00 | 1.67 | 0 00E + 00 |
AT1G66090 | Disease resistance protein (TIR-NBS class) | 0.36 | 1.00E + 00 | 0.29 | 1.00E + 00 | 0.66 | 1.00E + 00 | 0.55 | 1.00E + 00 | 1.67 | 0 00E + 00 |
AT5G06320 | NHL3_NDR1/HN1-Ike 3 | −0.28 | 1.00E + 00 | 0.11 | 1.00E + 00 | −0.08 | 1.00E + 00 | 0.31 | 1.00E + 00 | 1.60 | 0 00E + 00 |
AT2G29350 | SAG13__senescence-associated gene 13 | −0.17 | 1.00E + 00 | 0.17 | 1.00E + 00 | 0.82 | 1.00E + 00 | 0.59 | 1.00E + 00 | 1.55 | 0 00E + 00 |
AT1G13330 | AHP2__Arabidopsis Hop2 homolog | 0.00 | 1.00E + 00 | −0.09 | 1.00E + 00 | 0.69 | 1.00E + 00 | 0.36 | 1.00E + 00 | 1.55 | 0 00E + 00 |
AT5G13320 | GDG1_GH3.12_PBS3_WIN3__Auxin-responsive GH3 family protein | −0.1 | 1.00E + 00 | −0.25 | 1.00E + 00 | 0.11 | 1.00E + 00 | −0.07 | 1.00E + 00 | 1.54 | 0 00E + 00 |
AT5G17380b | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | 0.04 | 1.00E + 00 | 0.03 | 1.00E + 00 | 0.35 | 1.00E + 00 | 0.65 | 1.76E-01 | 1.48 | 0 00E + 00 |
AT2G20142a | Toll-Interleukin-Resistance (TIR) domain family protein | 0.06 | 1.00E + 00 | 0.05 | 1.00E + 00 | 0.21 | 1.00E + 00 | 0.23 | 1.00E + 00 | 1.47 | 0 00E + 00 |
AT4G26200 | ACS7_ATACS7__1-amino-cyclopropane-1-carboxylate synthase 7 | 0.22 | 1.00E + 00 | −0.01 | 1.00E + 00 | 0.18 | 1.00E + 00 | 0.26 | 1.00E + 00 | 1.44 | 0 00E + 00 |
AT1G74710 | ATICS1_EDS16_ICS1_SID2__ADC synthase superfamily protein | 0.05 | 1.00E + 00 | −0.19 | 1.00E + 00 | 0.14 | 1.00E + 00 | −0.09 | 1.00E + 00 | 1.41 | 0 00E + 00 |
AT4G11890 | Protein kinase superfamily protein | 0.10 | 1.00E + 00 | 0.19 | 1.00E + 00 | −0.04 | 1.00E + 00 | 0.56 | 1.00E + 00 | 1.38 | 0 00E + 00 |
AT5G25250 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | 0.07 | 1.00E + 00 | 0.00 | 1.00E + 00 | 0.28 | 1.00E + 00 | 0.40 | 1.00E + 00 | 1.38 | 0.00E + 00 |
AT1G26380 | FAD-binding Berberine family protein | 0.24 | 1.00E + 00 | 0.24 | 1.00E + 00 | 0.34 | 1.00E + 00 | 0.43 | 1.00E + 00 | 1.38 | 0 00E + 00 |
Genes differentially down-regulated after 2Â h of treatment whose levels remained low | |||||||||||
AT1G26810 | GALT1__galactosyltransferase1 | −0.13 | 1.00E + 00 | −1.16 | 7.36E-08 | −1.71 | 7.64E-12 | −1.65 | 0.00E + 00 | −1.79 | 0 00E + 00 |
AT3G19450b | ATCAD4_CAD_CAD-C_CAD4__GroES-like zinc-binding alcohol dehydrogenase family protein | 0.03 | 1.00E + 00 | −0.82 | 2.57E-02 | −1.22 | 1.62E-04 | −1.74 | 0.00E + 00 | −1.74 | 0.00E + 00 |
AT5G48930b | HCT__hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | −0.20 | 1.00E + 00 | −1.17 | 5.58E-08 | −1.11 | 3.21E-03 | −1.50 | 0.00E + 00 | −1.18 | 0 00E + 00 |
Genes differentially downregulated after 4Â h of treatment whose levels remained low | |||||||||||
AT1G08630b | THA1__threonine aldolase 1 | 0.06 | 1.00E + 00 | −0.54 | 1.00E + 00 | −1.81 | 0.00E + 00 | −0.92 | 3.97E-06 | −1.62 | 0 00E + 00 |
AT1G43160a | RAP2.6__related to AP2 6 | 0.02 | 1.00E + 00 | −0.57 | 1.00E + 00 | −1.57 | 1.81E-09 | −1.16 | 7.45E-12 | −0.99 | 1.74E-08 |
AT5G49730 | ATFRO6_FRO6_FRO6__ferric reduction oxidase 6 | −0.05 | 1.00E + 00 | −0.27 | 1.00E + 00 | −1.35 | 3.59E-06 | −0.79 | 9.47E-04 | −1.46 | 0 00E + 00 |
AT5G25460 | Protein of unknown function, DUF642 | −0.03 | 1.00E + 00 | −0.55 | 1.00E + 00 | −1.30 | 1.38E-05 | −1.72 | 0.00E + 00 | −1.41 | 0 00E + 00 |
AT4G29905 | unknown protein | 0.00 | 1.00E + 00 | 0.29 | 1.00E + 00 | −1.16 | 9.80E-04 | −0.76 | 3.17E-03 | −1.83 | 0 00E + 00 |
AT1G05240 | Peroxidase superfamily protein | 0.08 | 1.00E + 00 | 0.19 | 1.00E + 00 | −1.07 | 9. 14E-03 | −1.48 | 0.00E + 00 | −0.91 | 8 55E-07 |
AT4G23400 | PIP1;5_PIP1D__plasma membrane intrinsic protein 1;5 | −0.29 | 1.00E + 00 | −0.16 | 1.00E + 00 | −1.06 | 1.23E-02 | −0.99 | 1.06E-07 | −1.50 | 0 00E + 00 |
AT1G69100 | Eukaryotic aspartyl protease family protein | 0.13 | 1.00E + 00 | −0.04 | 1.00E + 00 | −1.06 | 1.39E-02 | −1.21 | 0.00E + 00 | −1.03 | 2 08E-09 |
AT5G01210b | HXXXD-type acyl-transferase famiy protein | 0.05 | 1.00E + 00 | −0.78 | 8.20E-02 | −1.65 | 7.64E-11 | −1.37 | 0.00E + 00 | −0.38 | 1.00E + 00 |
AT2G45960 | ATHH2_PIP1;2_PIP1B_TMP-A__plasma membrane intrinsic protein 1B | −0.17 | 1.00E + 00 | −0.11 | 1.00E + 00 | −1.14 | 1.71E-03 | −0.77 | 2.47E-03 | −0.37 | 1.00E + 00 |
AT1G65930b | cICDH__cytosolic NADP + −dependent isocitrate dehydrogenase | −0.03 | 1.00E + 00 | −0.29 | 1.00E + 00 | −1.13 | 2.23E-03 | −0.96 | 5.06E-07 | −0.56 | 1.00E + 00 |
AT4G14040 | EDA38_SBP2__selenium-binding protein 2 | 0.21 | 1.00E + 00 | −0.31 | 1.00E + 00 | −1.01 | 3. 90E-02 | −0.70 | 3.08E-02 | −0.60 | 4.43E-01 |
AT1G64370 | unknown protein | −0.15 | 1.00E + 00 | −0.22 | 1.00E + 00 | −1.01 | 3. 93E-02 | −0.77 | 1.80E-03 | −0.16 | 1.00E + 00 |
Genes differentially downregulated afteer 8Â h of treatment whose levels remained low | |||||||||||
AT3G03780b | ATMS2_MS2__methionine synthase 2 | 0.15 | 1.00E + 00 | −0.55 | 1.00E + 00 | −0.50 | 1.00E + 00 | −1.66 | 0.00E + 00 | −2.22 | 0 00E + 00 |
AT4G22210 | LCR85__low-molecular-weight cysteine-rich 85 | −0.16 | 1.00E + 00 | −0.27 | 1.00E + 00 | −0.69 | 1^+00 | −1.56 | 0.00E + 00 | −1.27 | 0 00E + 00 |
AT4G15390 | HXXXD-type acyl-transferase famiy protein | 0.08 | 1.00E + 00 | −0.44 | 1.00E + 00 | −0.70 | 1.00E + 00 | −1.39 | 0.00E + 00 | −1.54 | 0 00E + 00 |
AT3G59970b | MTHFR1__methylenetetrahydrofolate reductase 1 | 0.02 | 1.00E + 00 | −0.54 | 1.00E + 00 | −0.40 | 1.^+0 | −1.30 | 0.00E + 00 | −1.06 | 2.69E-10 |
AT2G44160b | MTHFR2__methylenetetrahydrofolate reductase 2 | 0.20 | 1.00E + 00 | −0.28 | 1.00E + 00 | −0.52 | 1.00E + 00 | −1.28 | 0.00E + 00 | −0.95 | 1 38E-07 |
AT5G39210 | CRR7__chlororespiratory reduction 7 | −0.09 | 1.00E + 00 | 0.14 | 1.00E + 00 | −0.58 | 1.^+0 | −1.27 | 0.00E + 00 | −0.89 | 2 07E-06 |
AT3G19820 | CBB1_DIM_DIM1_DWF1_EVE1__cell elongation protein/DWARF1 / DIMINUTO (DIM) | 0.07 | 1.00E + 00 | −0.11 | 1.00E + 00 | −0.45 | 1.00E + 00 | −1.27 | 0.00E + 00 | −1.15 | 0 00E + 00 |
AT1G29600a | Zinc finger C-x8-C-x5-C-x3-H type family protein | −0.10 | 1.00E + 00 | −0.15 | 1.00E + 00 | −0.19 | 1.00E + 00 | −1.22 | 0.00E + 00 | −1.02 | 2.45E-09 |
AT4G12545 | Bifunctional mhbitor/lpkl-transfer protein/seed storage 2S albumin superfamily protein | −0.03 | 1.00E + 00 | 0.28 | 1.00E + 00 | −0.70 | 1.00E + 00 | −1.20 | 0.00E + 00 | −1.66 | 0 00E + 00 |
AT1G11860b | Glycine cleavage T-protein family | 0.00 | 1.00E + 00 | −0.16 | 1.00E + 00 | −0.32 | 1.00E + 00 | −1.17 | 7.45E-12 | −1.14 | 0.00E + 00 |
AT3G60320 | Protein of unknown function (DUF630 and DUF632) | 0.03 | 1.00E + 00 | −0.18 | 1.00E + 00 | −0.72 | 1.00E + 00 | −1.10 | 3.72E-10 | −0.77 | 6.14E-04 |
AT5G24760 | GroES-like zinc-binding dehydrogenase family protein | −0.04 | 1.00E + 00 | −0.50 | 1.00E + 00 | −0.34 | 1.00E + 00 | −1.08 | 1.44E-09 | −1.19 | 0.00E + 00 |
AT5G17920b | ATCIMS_ATMETS_ATMS1__Cobalamin-independent synthase family protein | 0.13 | 1.00E + 00 | −0.26 | 1.00E + 00 | −0.41 | 1.00E + 00 | −1.06 | 3.43E-09 | −0.99 | 1.51E-08 |
AT3G06350b | EMB3004_MEE32__dehydroquinate dehydratase, putative/shikimate dehydrogenase, putative | −0.11 | 1.00E + 00 | −0.25 | 1.00E + 00 | −0.62 | 1.00E + 00 | −1.03 | 1.42E-08 | −0.85 | 1.91E-05 |
AT3G16390b | NSP3__nitrile specifier protein 3 | 0.06 | 1.00E + 00 | 0.20 | 1.00E + 00 | 0.30 | 1.00E + 00 | −1.03 | 1.88E-08 | −1.02 | 2.19E-09 |
AT1G29560a | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.15 | 1.00E + 00 | −0.38 | 1.00E + 00 | −0.45 | 1.00E + 00 | −1.00 | 8.83E-08 | −0.93 | 2.64E-07 |
AT5G03300b | ADK2__adenosine kinase 2 | 0.16 | 1.00E + 00 | −0.30 | 1.00E + 00 | 0.03 | 1.00E + 00 | −0.99 | 1.40E-07 | −0.94 | 1.98E-07 |
AT1G80830 | ATNRAMP1_NRAMP1_PMIT1__natural resistance-associated macrophage protein 1 | −0.02 | 1.00E + 00 | −0.46 | 1.00E + 00 | −0.93 | 2.79E-01 | −0.99 | 1.54E-07 | −0.75 | 1.16E-03 |
AT4G14890 | FdC2__2Fe-2S ferredoxin-like superfamily protein | −0.10 | 1.00E + 00 | −0.19 | 1.00E + 00 | −0.48 | 1.00E + 00 | −0.97 | 2.69E-07 | −1.01 | 4.56E-09 |
AT5G65010b | ASN2__asparagine synthetase 2 | −0.03 | 1.00E + 00 | 0.07 | 1.00E + 00 | −0.15 | 1.00E + 00 | −0.97 | 2.79E-07 | −0.84 | 3.11E-05 |
Genes differentially downregulated only after 24Â h of treatment | |||||||||||
AT5G36910a | THI2.2__thionin 2.2 | −0.16 | 1.00E + 00 | 0.04 | 1.00E + 00 | −0.38 | 1.00E + 00 | 0.21 | 1.00E + 00 | −1.73 | 0.00E + 00 |
AT2G25510 | unknown protein | −0.09 | 1.00E + 00 | 0.23 | 1.00E + 00 | 0.11 | 1.00E + 00 | −0.40 | 1.00E + 00 | −1.52 | 0.00E + 00 |
AT1G17190 | ATGSTU26_GSTU26__glutathione S-transferase tau 26 | −0.01 | 1.00E + 00 | −0.19 | 1.00E + 00 | 0.32 | 1.00E + 00 | −0.31 | 1.00E + 00 | −1.41 | 0.00E + 00 |
AT3G16450 | JAL33__Mannose-binding lectin superfamily protein | 0.00 | 1.00E + 00 | 0.28 | 1.00E + 00 | −0.51 | 1.00E + 00 | −0.67 | 9.73E-02 | −1.30 | 0.00E + 00 |
AT4G35100 | PIP2;7_PIP3_PIP3A_SIMIP__plasma membrane intrinsic protein 3 | 0.01 | 1.00E + 00 | 0.10 | 1.00E + 00 | −0.81 | 1.00E + 00 | −0.67 | 7.65E-02 | −1.26 | 0.00E + 00 |
AT3G28270 | Protein ofunknown function (DUF677) | −0.26 | 1.00E + 00 | 0.46 | 1.00E + 00 | 0.25 | 1.00E + 00 | −0.57 | 1.00E + 00 | −1.26 | 0.00E + 00 |
AT5G51720 | 2 iron, 2 sulfur cluster binding | −0.06 | 1.00E + 00 | −0.25 | 1.00E + 00 | −0.17 | 1.00E + 00 | −0.38 | 1.00E + 00 | −1.24 | 0.00E + 00 |
AT5G24420b | PGL5__6-phosphogluconolactonase 5 | 0.00 | 1.00E + 00 | 0.05 | 1.00E + 00 | −0.32 | 1.00E + 00 | −0.02 | 1.00E + 00 | −1.20 | 0.00E + 00 |
AT4G13870a | ATWEX_ATWRNEXO_WEX_WRNEXO__Werner syndrome-like exonuclease | −0.02 | 1.00E + 00 | 0.10 | 1.00E + 00 | 0.61 | 1.00E + 00 | −0.34 | 1.00E + 00 | −1.19 | 0.00E + 00 |
AT3G02380b | ATCOL2_COL2__CONSTANS-like 2 | −0.11 | 1.00E + 00 | −0.60 | 1.00E + 00 | −0.41 | 1.00E + 00 | 0.04 | 1.00E + 00 | −1.15 | 0.00E + 00 |
AT4G16980b | arab inogalactan-p rotein family | 0.07 | 1.00E + 00 | −0.10 | 1.00E + 00 | −0.84 | 1.00E + 00 | −0.54 | 1.00E + 00 | −1.14 | 0.00E + 00 |
AT3G45140 | ATLOX2_LOX2__lipoxygenase 2 | −0.12 | 1.00E + 00 | 0.51 | 1.00E + 00 | 0.51 | 1.00E + 00 | −0.24 | 1.00E + 00 | −1.11 | 1.50E-11 |
AT1G12090 | ELP__extensin-like protein | −0.06 | 1.00E + 00 | −0.04 | 1.00E + 00 | −0.52 | 1.00E + 00 | −0.33 | 1.00E + 00 | −1.08 | 8.97E-11 |
AT1G54000 | GLL22__GDSL-like Lipase/Acylhydrolase superfamily protein | 0.03 | 1.00E + 00 | −0.28 | 1.00E + 00 | −0.77 | 1.00E + 00 | −0.55 | 1.00E + 00 | −1.06 | 3.59E-10 |
AT5G58260b | NdhN__oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor | 0.04 | 1.00E + 00 | −0.01 | 1.00E + 00 | −0.14 | 1.00E + 00 | −0.58 | 1.00E + 00 | −1.05 | 6.51E-10 |
AT3G16420 | JAL30_PBP1__PYK10-binding protein 1 | −0.04 | 1.00E + 00 | 0.07 | 1.00E + 00 | 0.01 | 1.00E + 00 | −0.64 | 2.36E-01 | −1.02 | 2.91E-09 |
AT3G16440 | ATMLP-300B_MEE36_MLP-300B__myrosinase-binding protein-like protein-300B | −0.24 | 1.00E + 00 | 0.21 | 1.00E + 00 | −0.37 | 1.00E + 00 | −0.38 | 1.00E + 00 | −0.91 | 9.46E-07 |
AT3G15850b | ADS3_FAD5_FADB_JB67__fatty acid desaturase 5 | −0.21 | 1.00E + 00 | −0.01 | 1.00E + 00 | −0.68 | 1.00E + 00 | −0.06 | 1.00E + 00 | −0.91 | 9.94E-07 |
AT3G01480 | ATCYP38_CYP38__cyclophilin 38 | 0.07 | 1.00E + 00 | 0.01 | 1.00E + 00 | −0.76 | 1.00E + 00 | −0.54 | 1.00E + 00 | −0.88 | 4.47E-06 |
AT3G11170b | AtFAD7_FAD7_FADD__fatty acid desaturase 7 | 0.03 | 1.00E + 00 | −0.12 | 1.00E + 00 | −0.30 | 1.00E + 00 | −0.63 | 2.78E −01 | −0.87 | 7 28E-06 |