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Table 2 Quantitative trait loci (QTL) identified for wheat grain color (GC) evaluated for the seeds harvested from the field experiment of Enid, OK, in,2010 (Enid2010) and from the greenhouse (GH) experiment conducted in Manhattan KS, 2011 (GH2011)

From: Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat

Chromosome Marker name Marker type Chromosome Position (cM)a Positive allele frequency Enid2010 GH2011 Mean
p R 2 (%)b p R 2 (%) p R 2 (%)
1B Ra_c35710_395 90K 58.08 0.92 7.31E-06 9.9 2.19E-05 9.3 3.16E-06 10.8
1B RAC875_c1188_531 90K 58.08 0.92 4.62E-06 10.4 8.06E-06 10.3 1.33E-06 11.7
3A Xwmc559-1 SSR 107.20 0.94 1.25E-04 9.8 5.00E-04 10.6 1.57E-04 10.8
3A Tamyb10-A1-66 STS 114.02 0.63 8.75E-06 7.5 1.86E-04 10.2 2.25E-05 9.4
3A Tamyb10-A1-74 STS 114.02 0.61 3.12E-06 8.5 6.50E-05 11.1 7.32E-06 10.4
3B BS00040742_51 90K 68.26 0.36 9.42E-06 9.7 - - 2.82E-05 8.6
3B Tdurum_contig100004_204 90K - 0.38 4.81E-06 10.3 1.00E-05 10.1 7.54E-06 9.9
3B BS00025679_51 90K 76.22 0.58 2.45E-05 8.7 1.88E-06 11.8 6.30E-06 10.1
3B Kukri_c60633_121 90K 76.22 0.35 8.53E-06 9.8 2.35E-06 11.6 4.23E-06 10.5
3B Kukri_c60633_257 90K 76.22 0.33 3.63E-05 8.3 5.35E-06 10.7 9.98E-06 9.6
3B Excalibur_rep_c97324_623 90K 76.22 0.35 5.23E-06 10.3 1.64E-06 12.0 2.50E-06 11.0
3B Tamyb10-B1-1 STS 77.36 0.26 2.26E-05 11.1 1.06E-05 11.0 7.46E-06 11.8
3B Tamyb10-B1-2 STS 77.36 0.26 7.32E-07 11.1 8.21E-07 11.0 3.22E-07 11.8
3B Xbarc84 SSR 80.77 0.31 1.89E-05 4.1 - - 1.16E-04 6.4
3D GENE-1785_118 90K - 0.42 4.74E-06 10.4 2.42E-09 19.2 6.49E-08 14.8
3D D_GA8KES402JVT1Y_74 90K 11.37 0.54 1.32E-07 14.0 3.31E-10 21.5 1.79E-09 18.7
3D BS00067163_51 90K 92.34 0.52 5.36E-08 15.0 8.39E-11 23.2 7.49E-10 19.7
3D BS00063075_51 90K - 0.72 8.85E-05 7.5 5.03E-06 10.8 9.74E-06 9.7
3D Tamyb10-D1-93 STS - 0.56 4.31E-11 21.9 3.66E-13 17.5 6.51E-13 21.0
3D Xbarc376 SSR - 0.94 - - 5.00E-04 24.6 7.00E-04 23.3
1A/1D Xwmc93 SSR - 0.37 - - 6.10E-05 5.3 3.00E-04 7.2
1A/2D/3B Xbarc145 SSR - 0.11 - - 6.62E-05 5.0 1.65E-04 6.7
1A/1D/3A/5B Xbarc148 SSR - 0.70 2.50E-07 16.6 1.03E-06 18.7 2.27E-07 18.4
  1. aThe marker positions in the chromosome based on W7984 reference map
  2. bPhenotypic variance explained by a significant marker significantly related to grain color