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Table 3 Representative markers for quantitative trait loci (QTL) of wheat pre-harvest sprouting resistance identified in at least two of the experiments using sprouting rates (%) evaluated in the fall 2011 (2011F), spring 2012 (2012S), fall 2012 (2012F) and spring 2013 (2013S) greenhouse experiments, the 2013 and 2014 Manhattan (2013MH and 2014MH) and 2013 and 2014 Hays (2013Hays and 2014Hays) field experiments, and using the best linear unbiased predictions (BLUP) of each accession from all the greenhouse (GH_BLUP) and field (Field_BLUP) experiments

From: Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat

Chromosome Marker name Marker type Chromosome position (cM)a Positive allele frequency p R 2 (%)b Experiment
1A BS00011787_51 90K 34.28 0.49 3.30E-05 9.2 2013MH
1A Kukri_c60564_136 90K 50.20 0.93 6.54E-05 9.1 2011F
1D Ex_c6765_2118 90K 48.90 0.83 5.74E-04 6.7 2013S
1D wsnp_Ku_c19622_29138795 90K - 0.67 3.38E-04 7.3 2013S
1D Xgwm337 SSR - 0.18 4.98E-04 17.8 2012S
1.30E-04 13.3 2013S
4.70E-04 13.5 GH_BLUP
2D BobWhite_c1477_315 90K - 0.33 9.48E-04 6.2 2013S
2D Xgwm539 SSR - 0.11 5.00E-04 11.7 2013MH
6.00E-04 15.1 2014Hays
3.38E-04 16.7 Field_BLUP
3AS wsnp_Ex_rep_c67702_66370241 9K 9.12 0.78 4.42E-05 9.5 2011F
3AS wsnp_Ra_c2339_4506620 9K 9.12 0.38 5.28E-05 8.7 2013MH
5.66E-05 8.5 Field_BLUP
3AS KASP-TaPHS1.1 STS - 0.78 5.55E-05 9.3 2011F
3AS Xbarc57.2 SSR - 0.79 6.74E-06 14.0 2013MH
6.56E-06 14.2 2013Hays
9.46E-05 15.3 2014MH
2.00E-04 13.7 2014Hays
3.78E-06 15.9 Field_BLUP
3AL wsnp_Ku_c5359_9531713 9K L201.88 0.89 2.50E-04 7.6 2012S
3AL Tamyb10-A1-66 STS 114.02 0.61 4.67E-07 12.1 2013MH
1.82E-05 9.2 2013Hays
3.00E-04 6.8 2014MH
2.83E-05 8.6 2014Hays
2.01E-06 10.9 Field_BLUP
3AL Xwmc559-1 SSR 107.20 0.89 9.00E-04 10.4 2013Hays
3B wsnp_BE446087B_Ta_2_1 9K 46.66 0.91 3.22E-05 9.3 2013Hays
3BL Xbarc77 SSR - 0.94 5.33E-04 12.3 2012S
4.00E-04 7.6 2013MH
2.00E-04 9.5 2014Hays
4.82E-04 8.1 Field_BLUP
3BL Xgwm108 SSR - 0.81 9.00E-04 7.0 2013MH
2.00E-04 7.5 2014MH
5.68E-04 7.3 Field_BLUP
3BL Xgwm181 SSR - 0.92 3.00E-04 12.2 2011F
3DS BS00067117_51 90K - 0.47 8.26E-06 11.1 2014MH
8.56E-05 7.4 2014Hays
3DS Kukri_c50527_241 90K - 0.35 8.46E-04 6.3 2012S
2.97E-05 9.7 2014MH
3DS BobWhite_c3111_636 90K - 0.32 1.15E-05 10.8 2014MH
8.88E-05 7.4 2014Hays
7.09E-05 8.3 Field_BLUP
3DL BS00067163_51 90K 92.34 0.52 7.79E-05 8.3 2013MH
3DL Tamyb10-D1-93 STS - 0.56 6.00E-04 5.7 2013MH
3.00E-04 6.7 2013Hays
4A Ex_c66324_1151 90K 76.97 0.42 3.67E-17 47.6 2012F
2.37E-05 9.9 2014MH
1.34E-12 31.5 GH_BLUP
4A wsnp_Ex_rep_c66324_64493429 90K 76.97 0.43 1.51E-16 45.3 2012F
2.60E-05 9.8 2014MH
2.99E-12 30.4 GH_BLUP
4A Xbarc236 SSR 92.92 0.23 7.41E-05 14.1 2012F
4A Xwmc757 SSR - 0.11 9.84E-04 11.9 2012S
5A BobWhite_c4004_61 90K 35.36 0.83 2.62E-04 7.6 2013S
5A Excalibur_c54774_408 90K 47.99 0.77 5.60E-04 6.7 2012S
6B.2 wsnp_Ex_c19525_28494827 90K 94.46 0.91 1.21E-05 10.2 2013MH
8.19E-06 10.8 2013Hays
2.81E-05 9.3 Field_BLUP
6B.2 Excalibur_c15109_942 90K 95.60 0.64 4.29E-04 7.0 2013S
6B Xgwm88 SSR - 0.91 9.55E-04 8.9 2012S
7A wsnp_Ex_c26509_35755018 9K 69.63 0.95 1.41E-06 13.5 2011F
7A Xwmc603 SSR - 0.92 1.00E-04 25.4 2011F
7A Xgwm130 SSR - 0.94 5.00E-04 10.6 2013MH
1A/1D/3A/5B Xbarc148 SSR - 0.83 1.38E-08 22.8 2013MH
3.38E-05 11.9 2013Hays
2.22E-05 14.5 2014Hays
3.43E-06 14.7 Field_BLUP
5ABD Xbarc232 SSR - 0.92 6.00E-04 10.3 2013MH
4.40E-05 12.6 2014MH
3.97E-05 13.6 2014Hays
3.80E-04 10.9 Field_BLUP
  1. aThe positions of markers on W7984 reference sequence
  2. bPhenotypic variance explained by a significant marker significantly related to pre-harvest sprouting resistance