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Table 1 Overview of transcriptome sequencing and de novo assemble results

From: De novo transcriptome sequencing of black pepper (Piper nigrum L.) and an analysis of genes involved in phenylpropanoid metabolism in response to Phytophthora capsici

 

P. nigrum-1

P. nigrum-2

P. nigrum-3

P. flaviflorum-1

P. flaviflorum-2

P. flaviflorum-3

Raw reads (Mb)

49.26

54.44

54.44

49.26

54.44

54.44

Q20 percentage

99.33

98.24

98.30

99.33

98.23

98.17

Clean reads (Mb)

48.51

49.27

49.66

48.49

49.54

49.46

unigenes

62,206

55,880

54,681

61,187

64,183

65,096

Percent GC

45.23

45.57

45.48

45.27

45.03

45.58

Contig N50

1,131

1,065

1,069

1,301

1,091

1,026

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BMC Genomics

ISSN: 1471-2164

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