Table 1 Average FST across all polymorphic sites along with total counts and densities of sex-patterned SNPs across the regions of differentiation in S. melanotheron and O. niloticus
From: Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron
Average FST across polymorphic sites | Sex-patterned SNPs (per Mb) | Enriched 10 kb windows (per Mb) | Missense SNPs (per Mb) | PROVEAN SNPs < −2.5 (per Mb) | Synonymous SNPs (per Mb) | |
|---|---|---|---|---|---|---|
S. melanotheron | ||||||
LG1: 10.1 Mb-18.9 Mb | 0.111 | 5342 (607.05) | 193 (21.93) | 61 (6.93) | 6 (0.68) | 121 (13.75) |
LG1: 18.9 Mb-28 Mb | 0.081 | 2702 (296.92) | 52 (5.71) | 38 (4.18) | 5 (0.55) | 40 (4.40) |
LG22 | 0.057 | 5709 (216.16) | 80 (3.03) | 42 (1.59) | 9 (0.34) | 108 (4.09) |
Rest of the genome | 0.034 | 36,335 (41.13) | 123 (0.14) | 669 (0.76) | 103 (0.12) | 962 (1.09) |
Total | 50,088 | 448 | 810 | 123 | 1231 | |
O. niloticus | ||||||
LG1: 10.1 Mb-18.9 Mb | 0.039 | 10,792 (1226.36) | 517 (58.75) | 159 (18.07) | 25 (2.84) | 256 (29.09) |
LG1: 21.7 Mb-23.6 Mb | 0.024 | 399 (210.00) | 3 (0.33) | 5 (2.63) | 1 (0.53) | 6 (3.16) |
Rest of the genome | 0.021 | 8602 (9.38) | 19 (0.02) | 167 (0.18) | 27 (0.03) | 180 (0.20) |
Total | 19,793 | 539 | 331 | 53 | 442 | |