Skip to main content

Table 1 Average FST across all polymorphic sites along with total counts and densities of sex-patterned SNPs across the regions of differentiation in S. melanotheron and O. niloticus

From: Comparative analysis of a sex chromosome from the blackchin tilapia, Sarotherodon melanotheron

  Average FST across polymorphic sites Sex-patterned SNPs (per Mb) Enriched 10 kb windows (per Mb) Missense SNPs (per Mb) PROVEAN SNPs < −2.5 (per Mb) Synonymous SNPs (per Mb)
S. melanotheron
 LG1: 10.1 Mb-18.9 Mb 0.111 5342 (607.05) 193 (21.93) 61 (6.93) 6 (0.68) 121 (13.75)
 LG1: 18.9 Mb-28 Mb 0.081 2702 (296.92) 52 (5.71) 38 (4.18) 5 (0.55) 40 (4.40)
 LG22 0.057 5709 (216.16) 80 (3.03) 42 (1.59) 9 (0.34) 108 (4.09)
 Rest of the genome 0.034 36,335 (41.13) 123 (0.14) 669 (0.76) 103 (0.12) 962 (1.09)
 Total   50,088 448 810 123 1231
O. niloticus
 LG1: 10.1 Mb-18.9 Mb 0.039 10,792 (1226.36) 517 (58.75) 159 (18.07) 25 (2.84) 256 (29.09)
 LG1: 21.7 Mb-23.6 Mb 0.024 399 (210.00) 3 (0.33) 5 (2.63) 1 (0.53) 6 (3.16)
 Rest of the genome 0.021 8602 (9.38) 19 (0.02) 167 (0.18) 27 (0.03) 180 (0.20)
 Total   19,793 539 331 53 442