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Fig. 4 | BMC Genomics

Fig. 4

From: Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

Fig. 4

Biological networks of significantly enriched Gene Ontology (GO) terms. GO biological process terms of the simplified soil microcosm, upregulated by the presence of a T. atroviride (cluster 3), b A. mellea (cluster 5) or c both A. mellea and T. atroviride (cluster 7). Significantly enriched GO terms (P < 0.05) were identified using the BiNGO tool [42] and visualised with Cytoscape software [43]. The colour scale legend indicates the level of significance for enriched GO terms. White nodes indicate not significantly overrepresented categories. Dotted lines indicate connection between biological process categories in the GO chart, where ancestor and child are omitted for simplicity

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