Table 2 Final draft genome assembly statistics of the male and female genomes following the addition of 454 and PacBio reads, including a measure of the robustness of the assembly in the number of core eukaryotic genes assembled (CEGMA)
Parameter | Female | Male |
|---|---|---|
Optimal kmer (bp) | 60 | 50 |
No. of contigs | 192,662 | 187,700 |
N50 (bp) | 7918 | 7177 |
Avg. contig (bp) | 2859 | 2846 |
Max. contig (bp) | 116,828 | 691,679 |
% reads used | 98.03 | 97.38 |
Avg. coverage | 44X | 44X |
% AT | 72Â % | 72Â % |
Genome Size (Mb) | 550 | 534 |
No. of contigs (> = 1000 bp) | 96,027 | 98,029 |
Total length Mb (> = 1000 bp) | 485 | 473 |
No. of N’s per 100 kb | 1565 | 1800 |
CEGMA % (complete) | 93.95 | 96.77 |
CEGMA % (partial) | 99.19 | 99.60 |