TY - CHAP AU - Agrios, G. N. ED - Agrios, G. N. PY - 2005 DA - 2005// TI - chapter eleven - PLANT DISEASES CAUSED BY FUNGI BT - Plant Pathology PB - Academic CY - San Diego UR - https://doi.org/10.1016/B978-0-08-047378-9.50017-8 DO - 10.1016/B978-0-08-047378-9.50017-8 ID - Agrios2005 ER - TY - JOUR AU - Takken, F. AU - Rep, M. PY - 2010 DA - 2010// TI - The arms race between tomato and Fusarium oxysporum JO - Mol Plant Pathol VL - 11 UR - https://doi.org/10.1111/j.1364-3703.2009.00605.x DO - 10.1111/j.1364-3703.2009.00605.x ID - Takken2010 ER - TY - JOUR AU - Michielse, C. B. AU - Rep, M. PY - 2009 DA - 2009// TI - Pathogen profile update: Fusarium oxysporum JO - Mol Plant Pathol VL - 10 UR - https://doi.org/10.1111/j.1364-3703.2009.00538.x DO - 10.1111/j.1364-3703.2009.00538.x ID - Michielse2009 ER - TY - CHAP AU - Dombrecht, B. AU - Kazan, K. AU - Manners, J. M. ED - Silva JA, T. PY - 2006 DA - 2006// TI - Improved resistance to Fusarium wilt through genetic engineering of defense signaling pathways BT - Floriculture, ornamental and plant biotechnology PB - Global Science Books CY - London ID - Dombrecht2006 ER - TY - JOUR AU - Williams, A. H. AU - Sharma, M. AU - Thatcher, L. F. AU - Azam, S. AU - Hane, J. K. AU - Sperschneider, J. AU - Kidd, B. N. AU - Anderson, J. P. AU - Ghosh, R. AU - Garg, G. PY - 2016 DA - 2016// TI - Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2486-8 DO - 10.1186/s12864-016-2486-8 ID - Williams2016 ER - TY - JOUR AU - Thatcher, L. F. AU - Gardiner, D. M. AU - Kazan, K. AU - Manners, J. M. PY - 2012 DA - 2012// TI - A highly conserved effector in Fusarium oxysporum is required for full virulence on Arabidopsis JO - Mol Plant Microbe Interact VL - 25 UR - https://doi.org/10.1094/MPMI-08-11-0212 DO - 10.1094/MPMI-08-11-0212 ID - Thatcher2012 ER - TY - JOUR AU - Gordon, T. R. AU - Martyn, R. D. PY - 1997 DA - 1997// TI - The evolutionary biology of Fusarium oxysporum JO - Annu Rev Phytopathol VL - 35 UR - https://doi.org/10.1146/annurev.phyto.35.1.111 DO - 10.1146/annurev.phyto.35.1.111 ID - Gordon1997 ER - TY - JOUR AU - O'Donnell, K. AU - Kistler, H. C. AU - Cigelnik, E. AU - Ploetz, R. C. PY - 1998 DA - 1998// TI - Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies JO - Proc Natl Acad Sci U S A VL - 95 UR - https://doi.org/10.1073/pnas.95.5.2044 DO - 10.1073/pnas.95.5.2044 ID - O'Donnell1998 ER - TY - JOUR AU - Ma, L. J. AU - Does, H. C. AU - Borkovich, K. A. AU - Coleman, J. J. AU - Daboussi, M. J. AU - Pietro, A. AU - Dufresne, M. AU - Freitag, M. AU - Grabherr, M. AU - Henrissat, B. PY - 2010 DA - 2010// TI - Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium JO - Nature VL - 464 UR - https://doi.org/10.1038/nature08850 DO - 10.1038/nature08850 ID - Ma2010 ER - TY - STD TI - Vlaardingerbroek I, Beerens B, Rose L, Fokkens L, Cornelissen BJC, Rep M. Exchange of core chromosomes and horizontal transfer of lineage-specific chromosomes in Fusarium oxysporum. Environ Microbiol. 2016:n/a-n/a. doi: 10.1111/1462-2920.13281 ID - ref10 ER - TY - JOUR AU - Laurence, M. H. AU - Summerell, B. A. AU - Liew, E. C. Y. PY - 2015 DA - 2015// TI - Fusarium oxysporum f. sp. canariensis: evidence for horizontal gene transfer of putative pathogenicity genes JO - Plant Pathol VL - 64 UR - https://doi.org/10.1111/ppa.12350 DO - 10.1111/ppa.12350 ID - Laurence2015 ER - TY - JOUR AU - Ma, L. -. J. PY - 2014 DA - 2014// TI - Horizontal chromosome transfer and rational strategies to manage Fusarium vascular wilt diseases JO - Mol Plant Pathol VL - 15 UR - https://doi.org/10.1111/mpp.12171 DO - 10.1111/mpp.12171 ID - Ma2014 ER - TY - JOUR AU - Schmidt, S. M. AU - Houterman, P. M. AU - Schreiver, I. AU - Ma, L. AU - Amyotte, S. AU - Chellappan, B. AU - Boeren, S. AU - Takken, F. L. AU - Rep, M. PY - 2013 DA - 2013// TI - MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-119 DO - 10.1186/1471-2164-14-119 ID - Schmidt2013 ER - TY - JOUR AU - Rep, M. AU - Does, H. C. AU - Meijer, M. AU - Wijk, R. AU - Houterman, P. M. AU - Dekker, H. L. AU - Koster, C. G. AU - Cornelissen, B. J. PY - 2004 DA - 2004// TI - A small, cysteine-rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for I-3-mediated resistance in tomato JO - Mol Microbiol VL - 53 UR - https://doi.org/10.1111/j.1365-2958.2004.04177.x DO - 10.1111/j.1365-2958.2004.04177.x ID - Rep2004 ER - TY - CHAP AU - Rep MS, S. AU - Dam, P. AU - Sain, M. AU - Vlaardingerbroek, I. AU - Shahi, S. AU - Widinugraheni, S. AU - Fokkens, L. AU - Tintor, N. AU - Beerens, B. AU - Houterman, P. AU - Does, C. ED - Sachs, M. S. PY - 2015 DA - 2015// TI - Effectors of Fusarium oxysporum: identification, function, evolution and regulation of gene expression BT - Fungal Genetics Reports PB - Fungal Genetics Stock Center CY - Pacific Grove, California ID - Rep MS2015 ER - TY - STD TI - Vlaardingerbroek I, Beerens B, Schmidt SM, Cornelissen BJC, Rep M. Dispensable chromosomes in Fusarium oxysporum f.sp. lycopersici. Mol Plant Pathol. 2016:n/a-n/a. doi: 10.1111/mpp.12440 ID - ref16 ER - TY - JOUR AU - Gawehns, F. AU - Houterman, P. M. AU - Ichou, F. A. AU - Michielse, C. B. AU - Hijdra, M. AU - Cornelissen, B. J. AU - Rep, M. AU - Takken, F. L. PY - 2014 DA - 2014// TI - The Fusarium oxysporum effector Six6 contributes to virulence and suppresses I-2-mediated cell death JO - Mol Plant Microbe Interact VL - 27 UR - https://doi.org/10.1094/MPMI-11-13-0330-R DO - 10.1094/MPMI-11-13-0330-R ID - Gawehns2014 ER - TY - JOUR AU - Sain, M. AU - Rep, M. PY - 2015 DA - 2015// TI - The Role of Pathogen-Secreted Proteins in Fungal Vascular Wilt Diseases JO - Mol Plant Microbe Interact VL - 16 ID - Sain2015 ER - TY - JOUR AU - Guo, L. AU - Han, L. AU - Yang, L. AU - Zeng, H. AU - Fan, D. AU - Zhu, Y. AU - Feng, Y. AU - Wang, G. AU - Peng, C. AU - Jiang, X. PY - 2014 DA - 2014// TI - Genome and transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. cubense causing banana vascular wilt disease JO - PLoS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0095543 DO - 10.1371/journal.pone.0095543 ID - Guo2014 ER - TY - JOUR AU - Gupta, S. AU - Bhar, A. AU - Das, S. PY - 2013 DA - 2013// TI - Understanding the molecular defence responses of host during chickpea–Fusarium interplay: where do we stand? JO - Funct Plant Biol VL - 40 UR - https://doi.org/10.1071/FP13063 DO - 10.1071/FP13063 ID - Gupta2013 ER - TY - JOUR AU - Trapero-Casas, A. J. -. D. R. PY - 1985 DA - 1985// TI - Fungal wilt and root rot diseases of chickpea in southern Spain JO - Phytopathology VL - 75 UR - https://doi.org/10.1094/Phyto-75-1146 DO - 10.1094/Phyto-75-1146 ID - Trapero-Casas1985 ER - TY - STD TI - Abera M, Sakhuja PK, Fininsa C, Ahmed S. Status of chickpea fusarium wilt (Fusarium oxysporum f. sp. ciceris) in northwestern Ethiopia. Arch Phytopathol Plant Protect. 2011;44:1261-72. ID - ref22 ER - TY - JOUR AU - Navas-Cortés, J. A. AU - Hau, B. AU - Jiménez-Díaz, R. M. PY - 2000 DA - 2000// TI - Yield Loss in Chickpeas in Relation to Development of Fusarium Wilt Epidemics JO - Phytopathology VL - 90 UR - https://doi.org/10.1094/PHYTO.2000.90.11.1269 DO - 10.1094/PHYTO.2000.90.11.1269 ID - Navas-Cortés2000 ER - TY - JOUR AU - Chatterjee, M. AU - Gupta, S. AU - Bhar, A. AU - Chakraborti, D. AU - Basu, D. AU - Das, S. PY - 2014 DA - 2014// TI - Analysis of root proteome unravels differential molecular responses during compatible and incompatible interaction between chickpea (Cicer arietinum L.) and Fusarium oxysporum f. sp. ciceri Race1 (Foc1) JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-949 DO - 10.1186/1471-2164-15-949 ID - Chatterjee2014 ER - TY - JOUR AU - Xue, R. AU - Wu, J. AU - Zhu, Z. AU - Wang, L. AU - Wang, X. AU - Wang, S. AU - Blair, M. W. PY - 2015 DA - 2015// TI - Differentially Expressed Genes in Resistant and Susceptible Common Bean (Phaseolus vulgaris L.) Genotypes in Response to Fusarium oxysporum f. sp. phaseoli JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0127698 DO - 10.1371/journal.pone.0127698 ID - Xue2015 ER - TY - JOUR AU - Rispail, N. AU - Bani, M. AU - Rubiales, D. PY - 2015 DA - 2015// TI - Resistance reaction of Medicago truncatula genotypes to Fusarium oxysporum: effect of plant age, substrate and inoculation method JO - Crop Pasture Sci VL - 66 UR - https://doi.org/10.1071/CP14216 DO - 10.1071/CP14216 ID - Rispail2015 ER - TY - JOUR AU - Rispail, N. AU - Rubiales, D. PY - 2014 DA - 2014// TI - Identification of Sources of Quantitative Resistance to Fusarium oxysporum f. sp. medicaginis in Medicago truncatula JO - Plant Dis VL - 98 UR - https://doi.org/10.1094/PDIS-03-13-0217-RE DO - 10.1094/PDIS-03-13-0217-RE ID - Rispail2014 ER - TY - JOUR AU - Ramírez-Suero, M. AU - Khanshour, A. AU - Martinez, Y. AU - Rickauer, M. PY - 2010 DA - 2010// TI - A study on the susceptibility of the model legume plant Medicago truncatula to the soil-borne pathogen Fusarium oxysporum JO - Eur J Plant Pathol VL - 126 UR - https://doi.org/10.1007/s10658-009-9560-x DO - 10.1007/s10658-009-9560-x ID - Ramírez-Suero2010 ER - TY - JOUR AU - Thatcher, L. F. AU - Gao, L. -. L. AU - Singh, K. B. PY - 2016 DA - 2016// TI - Jasmonate Signalling and Defence Responses in the Model Legume Medicago truncatula—A Focus on Responses to Fusarium Wilt Disease JO - Plants VL - 5 UR - https://doi.org/10.3390/plants5010011 DO - 10.3390/plants5010011 ID - Thatcher2016 ER - TY - JOUR AU - Kim, D. AU - Pertea, G. AU - Trapnell, C. AU - Pimentel, H. AU - Kelley, R. AU - Salzberg, S. L. PY - 2013 DA - 2013// TI - TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions JO - Genome Biol VL - 14 UR - https://doi.org/10.1186/gb-2013-14-4-r36 DO - 10.1186/gb-2013-14-4-r36 ID - Kim2013 ER - TY - JOUR AU - McFadden, H. G. AU - Wilson, I. W. AU - Chapple, R. M. AU - Dowd, C. PY - 2006 DA - 2006// TI - Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) genes expressed during infection of cotton (Gossypium hirsutum) JO - Mol Plant Pathol VL - 7 UR - https://doi.org/10.1111/j.1364-3703.2006.00327.x DO - 10.1111/j.1364-3703.2006.00327.x ID - McFadden2006 ER - TY - JOUR AU - Does, H. C. AU - Duyvesteijn, R. G. AU - Goltstein, P. M. AU - Schie, C. C. AU - Manders, E. M. AU - Cornelissen, B. J. AU - Rep, M. PY - 2008 DA - 2008// TI - Expression of effector gene SIX1 of Fusarium oxysporum requires living plant cells JO - Fungal Genet Biol VL - 45 UR - https://doi.org/10.1016/j.fgb.2008.06.002 DO - 10.1016/j.fgb.2008.06.002 ID - Does2008 ER - TY - JOUR AU - Stergiopoulos, I. AU - Wit, P. J. PY - 2009 DA - 2009// TI - Fungal effector proteins JO - Annu Rev Phytopathol VL - 47 UR - https://doi.org/10.1146/annurev.phyto.112408.132637 DO - 10.1146/annurev.phyto.112408.132637 ID - Stergiopoulos2009 ER - TY - JOUR AU - Robinson, M. D. AU - McCarthy, D. J. AU - Smyth, G. K. PY - 2010 DA - 2010// TI - edgeR: a Bioconductor package for differential expression analysis of digital gene expression data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp616 DO - 10.1093/bioinformatics/btp616 ID - Robinson2010 ER - TY - JOUR AU - Hacquard, S. AU - Kracher, B. AU - Hiruma, K. AU - Munch, P. C. AU - Garrido-Oter, R. AU - Thon, M. R. AU - Weimann, A. AU - Damm, U. AU - Dallery, J. -. F. AU - Hainaut, M. PY - 2016 DA - 2016// TI - Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi JO - Nat Commun VL - 7 UR - https://doi.org/10.1038/ncomms13072 DO - 10.1038/ncomms13072 ID - Hacquard2016 ER - TY - JOUR AU - O'Connell, R. J. AU - Thon, M. R. AU - Hacquard, S. AU - Amyotte, S. G. AU - Kleemann, J. AU - Torres, M. F. AU - Damm, U. AU - Buiate, E. A. AU - Epstein, L. AU - Alkan, N. PY - 2012 DA - 2012// TI - Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses JO - Nat Genet VL - 44 UR - https://doi.org/10.1038/ng.2372 DO - 10.1038/ng.2372 ID - O'Connell2012 ER - TY - JOUR AU - Zhang, Z. -. N. AU - Wu, Q. -. Y. AU - Zhang, G. -. Z. AU - Zhu, Y. -. Y. AU - Murphy, R. W. AU - Liu, Z. AU - Zou, C. -. G. PY - 2015 DA - 2015// TI - Systematic analyses reveal uniqueness and origin of the CFEM domain in fungi JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep13032 DO - 10.1038/srep13032 ID - Zhang2015 ER - TY - JOUR AU - Sperschneider, J. AU - Gardiner, D. M. AU - Dodds, P. N. AU - Tini, F. AU - Covarelli, L. AU - Singh, K. B. AU - Manners, J. M. AU - Taylor, J. M. PY - 2016 DA - 2016// TI - EffectorP: predicting fungal effector proteins from secretomes using machine learning JO - New Phytol VL - 210 UR - https://doi.org/10.1111/nph.13794 DO - 10.1111/nph.13794 ID - Sperschneider2016 ER - TY - JOUR AU - Winnenburg, R. AU - Baldwin, T. K. AU - Urban, M. AU - Rawlings, C. AU - Köhler, J. AU - Hammond-Kosack, K. E. PY - 2006 DA - 2006// TI - PHI-base: a new database for pathogen host interactions JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj047 DO - 10.1093/nar/gkj047 ID - Winnenburg2006 ER - TY - JOUR AU - Winnenburg, R. AU - Urban, M. AU - Beacham, A. AU - Baldwin, T. K. AU - Holland, S. AU - Lindeberg, M. AU - Hansen, H. AU - Rawlings, C. AU - Hammond-Kosack, K. E. AU - Köhler, J. PY - 2008 DA - 2008// TI - PHI-base update: additions to the pathogen–host interaction database JO - Nucleic Acids Res VL - 36 ID - Winnenburg2008 ER - TY - JOUR AU - Michielse, C. B. AU - Wijk, R. AU - Reijnen, L. AU - Manders, E. M. AU - Boas, S. AU - Olivain, C. AU - Alabouvette, C. AU - Rep, M. PY - 2009 DA - 2009// TI - The nuclear protein Sge1 of Fusarium oxysporum is required for parasitic growth JO - PLoS Pathog VL - 5 UR - https://doi.org/10.1371/journal.ppat.1000637 DO - 10.1371/journal.ppat.1000637 ID - Michielse2009 ER - TY - JOUR AU - Michielse, C. B. AU - Wijk, R. AU - Reijnen, L. AU - Cornelissen, B. J. AU - Rep, M. PY - 2009 DA - 2009// TI - Insight into the molecular requirements for pathogenicity of Fusarium oxysporum f. sp. lycopersici through large-scale insertional mutagenesis JO - Genome Biol VL - 10 UR - https://doi.org/10.1186/gb-2009-10-1-r4 DO - 10.1186/gb-2009-10-1-r4 ID - Michielse2009 ER - TY - JOUR AU - Pazzagli, L. AU - Seidl-Seiboth, V. AU - Barsottini, M. AU - Vargas, W. A. AU - Scala, A. AU - Mukherjee, P. K. PY - 2014 DA - 2014// TI - Cerato-platanins: Elicitors and effectors JO - Plant Sci VL - 228 UR - https://doi.org/10.1016/j.plantsci.2014.02.009 DO - 10.1016/j.plantsci.2014.02.009 ID - Pazzagli2014 ER - TY - JOUR AU - Baccelli, I. PY - 2015 DA - 2015// TI - Cerato-platanin family proteins: one function for multiple biological roles? JO - Front Plant Sci VL - 5 UR - https://doi.org/10.3389/fpls.2014.00769 DO - 10.3389/fpls.2014.00769 ID - Baccelli2015 ER - TY - JOUR AU - Ma, L. AU - Houterman, P. M. AU - Gawehns, F. AU - Cao, L. AU - Sillo, F. AU - Richter, H. AU - Clavijo-Ortiz, M. J. AU - Schmidt, S. M. AU - Boeren, S. AU - Vervoort, J. PY - 2015 DA - 2015// TI - The AVR2–SIX5 gene pair is required to activate I-2-mediated immunity in tomato JO - New Phytol VL - 208 UR - https://doi.org/10.1111/nph.13455 DO - 10.1111/nph.13455 ID - Ma2015 ER - TY - JOUR AU - Houterman, P. M. AU - Cornelissen, B. J. AU - Rep, M. PY - 2008 DA - 2008// TI - Suppression of plant resistance gene-based immunity by a fungal effector JO - PLoS Pathog VL - 4 UR - https://doi.org/10.1371/journal.ppat.1000061 DO - 10.1371/journal.ppat.1000061 ID - Houterman2008 ER - TY - JOUR AU - Houterman, P. M. AU - Ma, L. AU - Ooijen, G. AU - Vroomen, M. J. AU - Cornelissen, B. J. AU - Takken, F. L. AU - Rep, M. PY - 2009 DA - 2009// TI - The effector protein Avr2 of the xylem-colonizing fungus Fusarium oxysporum activates the tomato resistance protein I-2 intracellularly JO - Plant J VL - 58 UR - https://doi.org/10.1111/j.1365-313X.2009.03838.x DO - 10.1111/j.1365-313X.2009.03838.x ID - Houterman2009 ER - TY - JOUR AU - Schmidt, S. M. AU - Lukasiewicz, J. AU - Farrer, R. AU - Dam, P. AU - Bertoldo, C. AU - Rep, M. PY - 2016 DA - 2016// TI - Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon JO - New Phytol VL - 209 UR - https://doi.org/10.1111/nph.13584 DO - 10.1111/nph.13584 ID - Schmidt2016 ER - TY - JOUR AU - Houterman, P. M. AU - Speijer, D. AU - Dekker HL, C. G. D. E. K. AU - Cornelissen, B. J. AU - Rep, M. PY - 2007 DA - 2007// TI - The mixed xylem sap proteome of Fusarium oxysporum-infected tomato plants JO - Mol Plant Pathol VL - 8 UR - https://doi.org/10.1111/j.1364-3703.2007.00384.x DO - 10.1111/j.1364-3703.2007.00384.x ID - Houterman2007 ER - TY - JOUR AU - Lanubile, A. AU - Muppirala, U. K. AU - Severin, A. J. AU - Marocco, A. AU - Munkvold, G. P. PY - 2015 DA - 2015// TI - Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-2318-2 DO - 10.1186/s12864-015-2318-2 ID - Lanubile2015 ER - TY - JOUR AU - Bai, T. T. AU - Xie, W. B. AU - Zhou, P. P. AU - Wu, Z. L. AU - Xiao, W. C. AU - Zhou, L. PY - 2013 DA - 2013// TI - Transcriptome and expression profile analysis of highly resistant and susceptible banana roots challenged with Fusarium oxysporum f. sp. cubense tropical race 4 JO - Plos ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0073945 DO - 10.1371/journal.pone.0073945 ID - Bai2013 ER - TY - JOUR AU - Li, C. AU - Shao, J. AU - Wang, Y. AU - Li, W. AU - Guo, D. AU - Yan, B. AU - Xia, Y. AU - Peng, M. PY - 2013 DA - 2013// TI - Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-851 DO - 10.1186/1471-2164-14-851 ID - Li2013 ER - TY - JOUR AU - Li, C. Y. AU - Deng, G. M. AU - Yang, J. AU - Viljoen, A. AU - Jin, Y. AU - Kuang, R. B. PY - 2012 DA - 2012// TI - Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4 JO - BMC Genom VL - 13 UR - https://doi.org/10.1186/1471-2164-13-374 DO - 10.1186/1471-2164-13-374 ID - Li2012 ER - TY - JOUR AU - Lyons, R. AU - Rusu, A. AU - Stiller, J. AU - Powell, J. AU - Manners, J. M. AU - Kazan, K. PY - 2015 DA - 2015// TI - Investigating the Association between Flowering Time and Defense in the Arabidopsis thaliana-Fusarium oxysporum Interaction JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0127699 DO - 10.1371/journal.pone.0127699 ID - Lyons2015 ER - TY - JOUR AU - Lyons, R. AU - Stiller, J. AU - Powell, J. AU - Rusu, A. AU - Manners, J. M. AU - Kazan, K. PY - 2015 DA - 2015// TI - Fusarium oxysporum Triggers Tissue-Specific Transcriptional Reprogramming in Arabidopsis thaliana JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0121902 DO - 10.1371/journal.pone.0121902 ID - Lyons2015 ER - TY - STD TI - Zhu QH, Stephen S, Kazan K, Jin G, Fan L, Taylor J. Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq. Gene. 2013;512. ID - ref56 ER - TY - JOUR AU - Xing, M. AU - Lv, H. AU - Ma, J. AU - Xu, D. AU - Li, H. AU - Yang, L. AU - Kang, J. AU - Wang, X. AU - Fang, Z. PY - 2016 DA - 2016// TI - Transcriptome Profiling of Resistance to Fusarium oxysporum f. sp. conglutinans in Cabbage (Brassica oleracea) Roots JO - PLoS ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0148048 DO - 10.1371/journal.pone.0148048 ID - Xing2016 ER - TY - JOUR AU - Wang, Z. AU - Zhang, J. AU - Jia, C. AU - Liu, J. AU - Li, Y. AU - Yin, X. AU - Xu, B. AU - Jin, Z. PY - 2012 DA - 2012// TI - De Novo characterization of the banana root transcriptome and analysis of gene expression under Fusarium oxysporum f. sp. cubense tropical race 4 infection JO - BMC Genomics VL - 13 UR - https://doi.org/10.1186/1471-2164-13-1 DO - 10.1186/1471-2164-13-1 ID - Wang2012 ER - TY - JOUR AU - Ashraf, N. AU - Ghai, D. AU - Barman, P. AU - Basu, S. AU - Gangisetty, N. AU - Mandal, M. K. AU - Chakraborty, N. AU - Datta, A. AU - Chakraborty, S. PY - 2009 DA - 2009// TI - Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-415 DO - 10.1186/1471-2164-10-415 ID - Ashraf2009 ER - TY - JOUR AU - Castillejo, M. A. AU - Bani, M. AU - Rubiales, D. PY - 2015 DA - 2015// TI - Understanding pea resistance mechanisms in response to Fusarium oxysporum through proteomic analysis JO - Phytochemistry VL - 115 UR - https://doi.org/10.1016/j.phytochem.2015.01.009 DO - 10.1016/j.phytochem.2015.01.009 ID - Castillejo2015 ER - TY - JOUR AU - Zhao, Z. AU - Liu, H. AU - Wang, C. AU - Xu, J. R. PY - 2013 DA - 2013// TI - Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-274 DO - 10.1186/1471-2164-14-274 ID - Zhao2013 ER - TY - JOUR AU - Sestili, S. AU - Polverari, A. AU - Luongo, L. AU - Ferrarini, A. AU - Scotton, M. AU - Hussain, J. PY - 2011 DA - 2011// TI - Distinct colonization patterns and cDNA-AFLP transcriptome profiles in compatible and incompatible interactions between melon and different races of Fusarium oxysporum f. sp. melonis JO - BMC Genom VL - 12 UR - https://doi.org/10.1186/1471-2164-12-122 DO - 10.1186/1471-2164-12-122 ID - Sestili2011 ER - TY - JOUR AU - Lowe, R. G. AU - Cassin, A. AU - Grandaubert, J. AU - Clark, B. L. AU - Wouw, A. P. AU - Rouxel, T. AU - Howlett, B. J. PY - 2014 DA - 2014// TI - Genomes and transcriptomes of partners in plant-fungal-interactions between canola (Brassica napus) and two Leptosphaeria species JO - PLoS ONE VL - 9 ID - Lowe2014 ER - TY - JOUR AU - Kubicek, C. P. AU - Starr, T. L. AU - Glass, N. L. PY - 2014 DA - 2014// TI - Plant cell wall–degrading enzymes and their secretion in plant-pathogenic fungi JO - Annu Rev Phytopathol VL - 52 UR - https://doi.org/10.1146/annurev-phyto-102313-045831 DO - 10.1146/annurev-phyto-102313-045831 ID - Kubicek2014 ER - TY - JOUR AU - Lo Presti, L. AU - Lanver, D. AU - Schweizer, G. AU - Tanaka, S. AU - Liang, L. AU - Tollot, M. AU - Zuccaro, A. AU - Reissmann, S. AU - Kahmann, R. PY - 2015 DA - 2015// TI - Fungal effectors and plant susceptibility JO - Ann Rev Plant Biol VL - 66 UR - https://doi.org/10.1146/annurev-arplant-043014-114623 DO - 10.1146/annurev-arplant-043014-114623 ID - Lo Presti2015 ER - TY - BOOK AU - Beckman, C. H. PY - 1987 DA - 1987// TI - The nature of wilt diseases of plants / C.H. Beckman PB - APS Press CY - St. Paul, Minn ID - Beckman1987 ER - TY - JOUR AU - Roncero, M. I. G. AU - Hera, C. AU - Ruiz-Rubio, M. AU - Garcıa Maceira, F. I. AU - Madrid, M. P. AU - Caracuel, Z. AU - Calero, F. PY - 2003 DA - 2003// TI - Fusarium as a model for studying virulence in soilborne plant pathogens JO - Physiol Mol Plant Pathol VL - 62 UR - https://doi.org/10.1016/S0885-5765(03)00043-2 DO - 10.1016/S0885-5765(03)00043-2 ID - Roncero2003 ER - TY - JOUR AU - Yadeta, K. AU - Thomma, B. PY - 2013 DA - 2013// TI - The xylem as battleground for plant hosts and vascular wilt pathogens JO - Front Plant Sci VL - 4 ID - Yadeta2013 ER - TY - STD TI - Bravo Ruiz G, Di Pietro A, Roncero MIG. Combined action of the major secreted exo- and endopolygalacturonase is required for full virulence of Fusarium oxysporum. Mol Plant Pathol. 2016;17(3):339-53. ID - ref69 ER - TY - JOUR AU - Recorbet, G. AU - Steinberg, C. AU - Olivain, C. AU - Edel, V. AU - Trouvelot, S. AU - Dumas-Gaudot, E. AU - Gianinazzi, S. AU - Alabouvette, C. PY - 2003 DA - 2003// TI - Wanted: pathogenesis-related marker molecules for Fusarium oxysporum JO - New Phytol VL - 159 UR - https://doi.org/10.1046/j.1469-8137.2003.00795.x DO - 10.1046/j.1469-8137.2003.00795.x ID - Recorbet2003 ER - TY - JOUR AU - Jashni, M. K. AU - Dols, I. H. M. AU - Iida, Y. AU - Boeren, S. AU - Beenen, H. G. AU - Mehrabi, R. AU - Collemare, J. AU - Wit, P. J. G. M. PY - 2015 DA - 2015// TI - Synergistic Action of a Metalloprotease and a Serine Protease from Fusarium oxysporum f. sp. lycopersici Cleaves Chitin-Binding Tomato Chitinases, Reduces Their Antifungal Activity, and Enhances Fungal Virulence JO - Mol Plant Microbe Interact VL - 28 UR - https://doi.org/10.1094/MPMI-04-15-0074-R DO - 10.1094/MPMI-04-15-0074-R ID - Jashni2015 ER - TY - JOUR AU - Langner, T. AU - Göhre, V. PY - 2016 DA - 2016// TI - Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions JO - Curr Genet VL - 62 UR - https://doi.org/10.1007/s00294-015-0530-x DO - 10.1007/s00294-015-0530-x ID - Langner2016 ER - TY - JOUR AU - Huang, Q. -. S. AU - Xie, X. -. L. AU - Liang, G. AU - Gong, F. AU - Wang, Y. AU - Wei, X. -. Q. AU - Wang, Q. AU - Ji, Z. -. L. AU - Chen, Q. -. X. PY - 2012 DA - 2012// TI - The GH18 family of chitinases: Their domain architectures, functions and evolutions JO - Glycobiology VL - 22 UR - https://doi.org/10.1093/glycob/cwr092 DO - 10.1093/glycob/cwr092 ID - Huang2012 ER - TY - JOUR AU - Liu, T. AU - Song, T. AU - Zhang, X. AU - Yuan, H. AU - Su, L. AU - Li, W. AU - Xu, J. AU - Liu, S. AU - Chen, L. AU - Chen, T. PY - 2014 DA - 2014// TI - Unconventionally secreted effectors of two filamentous pathogens target plant salicylate biosynthesis JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms5686 DO - 10.1038/ncomms5686 ID - Liu2014 ER - TY - STD TI - Taylor A, Vagany V, Jackson AC, Harrison RJ, Rainoni A, Clarkson JP. Identification of pathogenicity-related genes in Fusarium oxysporum f. sp. cepae. Mol Plant Pathol 2016;17(7):1032-47. ID - ref75 ER - TY - JOUR AU - Sperschneider, J. AU - Gardiner, D. M. AU - Thatcher, L. F. AU - Lyons, R. AU - Singh, K. B. AU - Manners, J. M. AU - Taylor, J. M. PY - 2015 DA - 2015// TI - Genome-wide analysis in three Fusarium pathogens identifies rapidly evolving chromosomes and genes associated with pathogenicity JO - Genome Biol Evol VL - 7 UR - https://doi.org/10.1093/gbe/evv092 DO - 10.1093/gbe/evv092 ID - Sperschneider2015 ER - TY - JOUR AU - Bolton, M. D. AU - Esse, H. P. AU - Vossen, J. H. AU - Jonge, R. AU - Stergiopoulos, I. AU - Stulemeijer, I. J. AU - Berg, G. C. AU - Borras-Hidalgo, O. AU - Dekker, H. L. AU - Koster, C. G. PY - 2008 DA - 2008// TI - The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species JO - Mol Microbiol VL - 69 UR - https://doi.org/10.1111/j.1365-2958.2008.06270.x DO - 10.1111/j.1365-2958.2008.06270.x ID - Bolton2008 ER - TY - JOUR AU - Kombrink, A. AU - Thomma, B. P. H. J. PY - 2013 DA - 2013// TI - LysM Effectors: Secreted Proteins Supporting Fungal Life JO - PLoS Pathog VL - 9 UR - https://doi.org/10.1371/journal.ppat.1003769 DO - 10.1371/journal.ppat.1003769 ID - Kombrink2013 ER - TY - JOUR AU - Jonge, R. AU - Esse, H. P. AU - Kombrink, A. AU - Shinya, T. AU - Desaki, Y. AU - Bours, R. AU - Krol, S. AU - Shibuya, N. AU - Joosten, M. H. AU - Thomma, B. P. PY - 2010 DA - 2010// TI - Conserved fungal LysM effector Ecp6 prevents chitin-triggered immunity in plants JO - Science VL - 329 UR - https://doi.org/10.1126/science.1190859 DO - 10.1126/science.1190859 ID - Jonge2010 ER - TY - JOUR AU - Sánchez-Vallet, A. AU - Mesters, J. R. AU - Thomma, B. P. H. J. PY - 2015 DA - 2015// TI - The battle for chitin recognition in plant-microbe interactions JO - FEMS Microbiol Rev VL - 39 UR - https://doi.org/10.1093/femsre/fuu003 DO - 10.1093/femsre/fuu003 ID - Sánchez-Vallet2015 ER - TY - JOUR AU - Jonge, R. AU - Bolton, M. D. AU - Kombrink, A. AU - Berg, G. C. M. AU - Yadeta, K. A. AU - Thomma, B. P. H. J. PY - 2013 DA - 2013// TI - Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen JO - Genome Res VL - 23 UR - https://doi.org/10.1101/gr.152660.112 DO - 10.1101/gr.152660.112 ID - Jonge2013 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Gao, L. -. L. AU - Anderson, J. P. AU - Klingler, J. P. AU - Nair, R. M. AU - Edwards, O. R. AU - Singh, K. B. PY - 2007 DA - 2007// TI - Involvement of the Octadecanoid Pathway in Bluegreen Aphid Resistance in Medicago truncatula JO - Mol Plant-Microbe Interact VL - 20 UR - https://doi.org/10.1094/MPMI-20-0082 DO - 10.1094/MPMI-20-0082 ID - Gao2007 ER - TY - JOUR AU - Martin, M. PY - 2011 DA - 2011// TI - Cutadapt removes adapter sequences from high-throughput sequencing reads JO - EMBnetjournal VL - 17 ID - Martin2011 ER - TY - JOUR AU - Li, H. AU - Handsaker, B. AU - Wysoker, A. AU - Fennell, T. AU - Ruan, J. AU - Homer, N. AU - Marth, G. AU - Abecasis, G. AU - Durbin, R. PY - 2009 DA - 2009// TI - The sequence alignment/map format and SAMtools JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp352 DO - 10.1093/bioinformatics/btp352 ID - Li2009 ER - TY - JOUR AU - Robinson, J. T. AU - Thorvaldsdottir, H. AU - Winckler, W. AU - Guttman, M. AU - Lander, E. S. AU - Getz, G. AU - Mesirov, J. P. PY - 2011 DA - 2011// TI - Integrative genomics viewer JO - Nat Biotech VL - 29 UR - https://doi.org/10.1038/nbt.1754 DO - 10.1038/nbt.1754 ID - Robinson2011 ER - TY - JOUR AU - Quinlan, A. R. AU - Hall, I. M. PY - 2010 DA - 2010// TI - BEDTools: a flexible suite of utilities for comparing genomic features JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq033 DO - 10.1093/bioinformatics/btq033 ID - Quinlan2010 ER - TY - JOUR AU - Hu, Z. -. L. AU - Bao, J. AU - Reecy, J. M. PY - 2008 DA - 2008// TI - CateGOrizer: a web-based program to batch analyze gene ontology classification categories JO - Online J Bioinformatics VL - 9 ID - Hu2008 ER -