Fig. 3

Pfam domains more abundant in the in planta up-regulated datasets. Pfam domains enriched in the in planta up-regulated datasets from resistant (A17) and susceptible (DZA315) accessions relative to in vitro growth conditions are listed. Schematic figures illustrate the tissue sampled (represented as root tissues below the dashed line infected with Fom (purple spores), highlighting the chlorotic leaves visible at the later stage of the susceptible interaction). Enriched Pfam domains were identified based on comparisons against the total Fom protein set using Fisher’s exact test with a significance threshold of p ≤ 0.05. Values are ranked by representation of Pfam domains with colour coding signifying increasing abundance within each dataset. Cs: counts of Pfam domain containing proteins in DEG dataset. % D: % representation of Pfam domain containing proteins in DEG dataset; % G: % representation of Pfam domain containing proteins in whole genome. Further details are provided in Additional File 6. Aldeh: Aldehyde dehydrogenase; AIM24: Mitochondrial biogenesis; CIA30: mitochondrial Complex I intermediate-associated protein; Dabb: Stress responsive A/B Barrel Domain; EutQ: Ethanolamine utilisation protein; GH: glycoside hydrolase; Grp1_Fun34_YaaH: acetate transporter; GFA: Glutathione-dependent formaldehyde-activating enzyme; GST: Glutathione S-transferase; HAD: Haloacid dehalogenase-like hydrolase; LigB: LigB subunit of aromatic ring-opening dioxygenase; Meth_synthase: methionine synthases; NDT80_PhoG: DNA binding-family; PLAC8: Placenta-specific gene 8 protein; Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase (includes oxidoreductases, NADH oxidases and peroxidases); SBP: Bacterial extracellular solute-binding protein; Thiamine4: thiamine biosynthetic enzyme