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Table 1 Mapping results of RNA-Seq data from Fusarium infected A17 (resistant) or DZA315 (susceptible) root samples

From: Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors

 

in vitro

Inf. A17 2 dpi

Inf. A17 7 dpi

Inf. DZA315 2 dpi

Inf. DZA315 7 dpi

Pre-processed reads for each replicate (million pairs)

58.7 ± 1.5

56.2 ± 1.4

55.5 ± 1.6

53.4 ± 0.9

55.4 ± 0.6

Range of read pair numbers mapped

54,789,566 ± 1,026,861.7

12,626.0 ± 951.5

30,343.2 ± 6,309.8

14,713.8 ± 1,745.2

91,061.5 ± 5,934.4

% range of reads mapped

92.6-94.2

0.016-0.028

0.021-0.080

0.021-0.038

0.139-0.194

Pairs with multiple alignments (%)

0.2

0.4-0.5

0.4-0.5

0.2-0.3

0.4-0.5

  1. Inf Fom infected, dpi days post inoculation; ±: SE